1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tcggtggcttttgctttgagtttttttttcagagactttgagtaattttttgattgtaagattcaccaaagtttatacgttgggacccttgcggttgcagGAACCTGCGGAATTGCGGAAAGCTGGTAACTGAAGAGCGGGAGAAGATTGTGAATATTCCTGACGGAAGTAATTGACTTAGTTTCTGTTCACCCTTTCAA
species | Oryza sativa |
transcript | LOC_Os01g07540.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATTCGCACCCTTCTTGGAGGACGCTGTGTTTAGTACTACAGGCAGTAAAG GAACCTGCGGAATTGCGGAAAGCTGGTAACTGAAGAGCGGGAGAAGATTGTEST: gi|88546669|gb|CI476335.1|CI476335
genomic: ATTCGCACCCTTCTTGGAGGACGCTGTGTTTAGTACTACAGGCAGTAAAGgttgtgcttc ... gcggttgcagGAACCTGCGGAATTGCGGAAAGCTGGTAACTGAAGAGCGGGAGAAGATTGT
EST: ATTCGCACCCTTCTTGGAGGACGCTGTGTTTAGTACTACAGGCAGTAAAG GAACCTGCGGAATTGCGGAAAGCTGGTAACTGAAGAGCGGGAGAAGATTGTEST: gi|88272139|gb|CI388192.1|CI388192
genomic: ATTCGCACCCTTCTTGGAGGACGCTGTGTTTAGTACTACAGGCAGTAAAGgttgtgcttc ... gcggttgcagGAACCTGCGGAATTGCGGAAAGCTGGTAACTGAAGAGCGGGAGAAGATTGT
EST: ATTCCCACCCTTCTTGGAGGACGCTGTGTTTAGTACTACAGGCAGTAAAG GAACCTGCGGAATTGCGGAAAGCTGGTAACTGAAGAGCGGGAGAAGATTGT
genomic: ATTCGCACCCTTCTTGGAGGACGCTGTGTTTAGTACTACAGGCAGTAAAGgttgtgcttc ... gcggttgcagGAACCTGCGGAATTGCGGAAAGCTGGTAACTGAAGAGCGGGAGAAGATTGT
ttttttgattgtaagattcaccaaagtttatacgttgggacccttgcggttgcagGAACCTGCGGAATTGCGGAAAGCTGGTAACTGAAGAGCGGGAGAAGATTGTGAATATTCCTGACGGAAGTAATTGACTTAGTTTCTGTTCACCCTTTCAA
ttttgat putative branch site (score: 2)
cccttgc putative PPT
aaagtttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcggtggcttttgctttgagtttttttttcagagactttgagtaattttttgattgtaagattcaccaaagtttatacgttgggacccttgcggttgcagGAACCTGCGGAATTGCGGAAAGCTGGTAACTGAAGAGCGGGAGAAGATTGTGAATATTCCTGACGGAAGTAATTGACTTAGTTTCTGTTCACCCTTTCAA
- - - - - -tgctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caccaaa