1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtactaaacttgtcctccaccaccctaatttgatgtaaccttaacttgtcctccaccaccctaatttgatgtaaccttatttctcataatcaatttttttttttgcagGACATATGGGCACGATTTGCTTATCAGGATGACATTACAAAT
species | Oryza sativa |
transcript | LOC_Os12g42730.4 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTGGTTTCGCGATGTTTGAAGTTTCACAGGAACTGATTGCACGCCCTAAG GACATATGGGCACGATTTGCTTATCAGGATGACATTACAAATEST: gi|29675549|gb|CB671824.1|CB671824
genomic: CTGGTTTCGCGATGTTTGAAGTTTCACAGGAACTGATTGCACGCCCTAAGgtactaaact ... ttttttgcagGACATATGGGCACGATTTGCTTATCAGGATGACATTACAAAT
EST: CTGGTTTCGCGATGTTTGAAGTTTCACAGGAACTGATTGCACGCCCTAAG GACATATGGGCACGATTTGCTTATCAGGATGACATTACAAATGTEST: gi|218485546|gb|FG969305.1|FG969305
genomic: CTGGTTTCGCGATGTTTGAAGTTTCACAGGAACTGATTGCACGCCCTAAGgtactaaact ... ttttttgcagGACATATGGGCACGATTTGCTTATCAGGATGACATTACAAATGT
EST: CTGGTTTCGCGATGTTTGAAGTTTCACAGGAACTGATTGCACGCCCTAAG GACATATGGGCACGATTTGCTTATCAGGATGACATTACAAAT
genomic: CTGGTTTCGCGATGTTTGAAGTTTCACAGGAACTGATTGCACGCCCTAAGgtactaaact ... ttttttgcagGACATATGGGCACGATTTGCTTATCAGGATGACATTACAAAT
caccaccctaatttgatgtaaccttatttctcataatcaatttttttttttgcagGACATATGGGCACGATTTGCTTATCAGGATGACATTACAAAT
atgtaac putative branch site (score: 3)
tcaattttttttttt putative PPT
ttatttctcataatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactaaacttgtcctccaccaccctaatttgatgtaaccttaacttgtcctccaccaccctaatttgatgtaaccttatttctcataatcaatttttttttttgcagGACATATGGGCACGATTTGCTTATCAGGATGACATTACAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG