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...ttgcatcatctgtgtctgtcaagcttgtttttttaaaaaatatttatttttcttgaaaagacccattaaaactttgtattgtttgtactttgtactgaagGATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGATAAAGCATTGCCTGCAATGCTTTTGTATAAGAAAGAGCGACAGCAGTAC
species | Oryza sativa |
transcript | LOC_Os11g34300.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAA GATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGAEST: gi|58679417|gb|CK068104.1|CK068104
genomic: GATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAAgtaagcattc ... tgtactgaagGATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGA
EST: GATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAA GATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGAEST: gi|29665211|gb|CB661486.1|CB661486
genomic: GATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAAgtaagcattc ... tgtactgaagGATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGA
EST: GATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAA GATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGAEST: gi|86539094|gb|CI179300.1|CI179300
genomic: GATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAAgtaagcattc ... tgtactgaagGATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGA
EST: GATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAA GATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGAEST: gi|88983252|gb|CI020816.1|CI020816
genomic: GATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAAgtaagcattc ... tgtactgaagGATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGA
EST: GATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAA GATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGAEST: gi|86870999|gb|CI326818.1|CI326818
genomic: GATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAAgtaagcattc ... tgtactgaagGATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGA
EST: TGGAGCACCGGACAAAGAAGGATAACAA GATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGAEST: gi|89173985|gb|CI041878.1|CI041878
genomic: TGGAGCACCGGACAAAGAAGGATAACAAgtaagcattc ... tgtactgaagGATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGA
EST: GATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAA GATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGAEST: gi|13165184|gb|AU173981.1|AU173981
genomic: GATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAAgtaagcattc ... tgtactgaagGATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGA
EST: GAAGGATANCAA GATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGAEST: gi|29639417|gb|CB644426.1|CB644426
genomic: GAAGGATAACAAgtaagcattc ... tgtactgaagGATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGA
EST: GATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAA GATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGAEST: gi|117248491|gb|CT862737.1|CT862737
genomic: GATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAAgtaagcattc ... tgtactgaagGATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGA
EST: GATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAA GATAAATGACTCTTACGCTGAGATTTTGGAAGGATTGCGATGCTACTTTGAEST: gi|29665212|gb|CB661487.1|CB661487
genomic: GATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAAgtaagcattc ... tgtactgaagGATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGA
EST: GATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAA GATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGA
genomic: GATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAAgtaagcattc ... tgtactgaagGATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGA
atttttcttgaaaagacccattaaaactttgtattgtttgtactttgtactgaagGATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGATAAAGCATTGCCTGCAATGCTTTTGTATAAGAAAGAGCGACAGCAGTAC
attaaaactttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcatcatctgtgtctgtcaagcttgtttttttaaaaaatatttatttttcttgaaaagacccattaaaactttgtattgtttgtactttgtactgaagGATAAATGACTCTTACGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGATAAAGCATTGCCTGCAATGCTTTTGTATAAGAAAGAGCGACAGCAGTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
-tgcatca
- - - - - -gtgtctg
- - - - - - - - - - - gcttgtt
- - - - - - - - - - - - - - - - -taaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaagac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt