1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cctgtacataatcagaactctccatgttgcattccaagacattattttgttccatatttattgcattgtgccaaatcatattccttcttttaatttgcagGTTTATTTTCTGCCGAGCAGTTATATTCTATTTTCACCCTGAGGAGAATGGTGAACATATACCAATCTGCCTACCCAGTCTTCCAGAATCAGTCGCGCCA
species | Oryza sativa |
transcript | LOC_Os09g29470.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTCTGGGGACAAATTTTACCAGATCCTTTTCTCAGGCGCCTGATCGTCAG GTTTATTTTCTGCCGAGCAGTTATCTTCTATTTTCACCCTGAGGAGAATGGEST: gi|29637840|gb|CB642849.1|CB642849
genomic: GTCTGGGGACAAATTTTACCAGATCCTTTTCTCAGGCGCCTGATCGTCAGgtaccttttt ... taatttgcagGTTTATTTTCTGCCGAGCAGTTATATTCTATTTTCACCCTGAGGAGAATGG
EST: GTCTGGGGACAAATTTTACCAGATCCTTTTCTCAGGCGCCTGATCGTCAG GTTTATTTTCTGCCGAGCAGTTATATTCTATTTTCACCCTGAGGAGAATGGEST: gi|218494056|gb|FG946879.1|FG946879
genomic: GTCTGGGGACAAATTTTACCAGATCCTTTTCTCAGGCGCCTGATCGTCAGgtaccttttt ... taatttgcagGTTTATTTTCTGCCGAGCAGTTATATTCTATTTTCACCCTGAGGAGAATGG
EST: GTCTGGGGACAAATTTTACCAGATCCTTTTCTCAGGCGCCTGATCGTCAG GTTTATTTTCTGCCGAGCAGTTATCTTCTATTTTCACCCTGAGGAGAATGGEST: gi|29677428|gb|CB673703.1|CB673703
genomic: GTCTGGGGACAAATTTTACCAGATCCTTTTCTCAGGCGCCTGATCGTCAGgtaccttttt ... taatttgcagGTTTATTTTCTGCCGAGCAGTTATATTCTATTTTCACCCTGAGGAGAATGG
EST: GTCTGGGGACAAATTTTACCAGATCCTTTTCTCAGGCGCCTGATCGTCAG GTTTATTTTCTGCCGAGCAGTTATATTCTATTTTCACCCTGAGGAGAATGG
genomic: GTCTGGGGACAAATTTTACCAGATCCTTTTCTCAGGCGCCTGATCGTCAGgtaccttttt ... taatttgcagGTTTATTTTCTGCCGAGCAGTTATATTCTATTTTCACCCTGAGGAGAATGG
tttgttccatatttattgcattgtgccaaatcatattccttcttttaatttgcagGTTTATTTTCTGCCGAGCAGTTATATTCTATTTTCACCCTGAGGAGAATGGTGAACATATACCAATCTGCCTACCCAGTCTTCCAGAATCAGTCGCGCCA
ttttaat putative branch site (score: 10)
tcatattccttctttt CT-rich tract
atatttattgcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctgtacataatcagaactctccatgttgcattccaagacattattttgttccatatttattgcattgtgccaaatcatattccttcttttaatttgcagGTTTATTTTCTGCCGAGCAGTTATATTCTATTTTCACCCTGAGGAGAATGGTGAACATATACCAATCTGCCTACCCAGTCTTCCAGAATCAGTCGCGCCA
cctgtac
- - - - - - - - - -ctccatg
- - - - - - - - - - - - - -tgcattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcattg