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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cctgtacataatcagaactctccatgttgcattccaagacattattttgttccatatttattgcattgtgccaaatcatattccttcttttaatttgcagGTTTATTTTCTGCCGAGCAGTTATATTCTATTTTCACCCTGAGGAGAATGGTGAACATATACCAATCTGCCTACCCAGTCTTCCAGAATCAGTCGCGCCA

Basic information

species Oryza sativa
transcript LOC_Os09g29470.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29623684|gb|CB628695.1|CB628695
EST:     GTCTGGGGACAAATTTTACCAGATCCTTTTCTCAGGCGCCTGATCGTCAG                         GTTTATTTTCTGCCGAGCAGTTATCTTCTATTTTCACCCTGAGGAGAATGG
genomic: GTCTGGGGACAAATTTTACCAGATCCTTTTCTCAGGCGCCTGATCGTCAGgtaccttttt ... taatttgcagGTTTATTTTCTGCCGAGCAGTTATATTCTATTTTCACCCTGAGGAGAATGG
EST: gi|218494056|gb|FG946879.1|FG946879
EST:     GTCTGGGGACAAATTTTACCAGATCCTTTTCTCAGGCGCCTGATCGTCAG                         GTTTATTTTCTGCCGAGCAGTTATCTTCTATTTTCACCCTGAGGAGAATGG
genomic: GTCTGGGGACAAATTTTACCAGATCCTTTTCTCAGGCGCCTGATCGTCAGgtaccttttt ... taatttgcagGTTTATTTTCTGCCGAGCAGTTATATTCTATTTTCACCCTGAGGAGAATGG
EST: gi|29637840|gb|CB642849.1|CB642849
EST:     GTCTGGGGACAAATTTTACCAGATCCTTTTCTCAGGCGCCTGATCGTCAG                         GTTTATTTTCTGCCGAGCAGTTATATTCTATTTTCACCCTGAGGAGAATGG
genomic: GTCTGGGGACAAATTTTACCAGATCCTTTTCTCAGGCGCCTGATCGTCAGgtaccttttt ... taatttgcagGTTTATTTTCTGCCGAGCAGTTATATTCTATTTTCACCCTGAGGAGAATGG
EST: gi|29677428|gb|CB673703.1|CB673703
EST:     GTCTGGGGACAAATTTTACCAGATCCTTTTCTCAGGCGCCTGATCGTCAG                         GTTTATTTTCTGCCGAGCAGTTATATTCTATTTTCACCCTGAGGAGAATGG
genomic: GTCTGGGGACAAATTTTACCAGATCCTTTTCTCAGGCGCCTGATCGTCAGgtaccttttt ... taatttgcagGTTTATTTTCTGCCGAGCAGTTATATTCTATTTTCACCCTGAGGAGAATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgttccatatttattgcattgtgccaaatcatattccttcttttaatttgcagGTTTATTTTCTGCCGAGCAGTTATATTCTATTTTCACCCTGAGGAGAATGGTGAACATATACCAATCTGCCTACCCAGTCTTCCAGAATCAGTCGCGCCA
                                          ttttaat  putative branch site (score: 3)
                              tcatattccttctttt  CT-rich tract
        atatttattgcatt  TA-rich tract