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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccattctcataggcgatgatatcttgcagcttgtatcttttcgatggcattttccttattttctcttaataatatgaaaaacaccaatttacattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGATGAACTTTTCATCTTGTGACAATCGTGTTGTGAAGCATCCTTTTTTATAC

Basic information

species Oryza sativa
transcript LOC_Os08g41460.6
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29625905|gb|CB630916.1|CB630916
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|86886375|gb|CI336078.1|CI336078
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|33675916|gb|CF304155.1|CF304155
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|33824610|gb|CF338118.1|CF338118
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|33684521|gb|CF312760.1|CF312760
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         C
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcag-
EST: gi|33684521|gb|CF312760.1|CF312760
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         C
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcag-
EST: gi|33684521|gb|CF312760.1|CF312760
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         C
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcag-
EST: gi|3763529|gb|AU030281.1|AU030281
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         C
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcag-
EST: gi|3763529|gb|AU030281.1|AU030281
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         C
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcag-
EST: gi|3763529|gb|AU030281.1|AU030281
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         C
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcag-
EST: gi|86600810|gb|CI356567.1|CI356567
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|33682743|gb|CF310982.1|CF310982
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|33684081|gb|CF312320.1|CF312320
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         C
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcag-
EST: gi|33684081|gb|CF312320.1|CF312320
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         C
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcag-
EST: gi|33684081|gb|CF312320.1|CF312320
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         C
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcag-
EST: gi|58592436|gb|CF990744.1|CF990744
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|29683116|gb|CB679391.1|CB679391
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         C
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcag-
EST: gi|29683116|gb|CB679391.1|CB679391
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         C
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcag-
EST: gi|29683116|gb|CB679391.1|CB679391
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         C
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcag-
EST: gi|86418696|gb|CI053497.1|CI053497
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         C
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcag-
EST: gi|86418696|gb|CI053497.1|CI053497
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         C
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcag-
EST: gi|86418696|gb|CI053497.1|CI053497
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         C
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcag-
EST: gi|33676725|gb|CF304964.1|CF304964
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|29684942|gb|CB681217.1|CB681217
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         C
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcag-
EST: gi|29684942|gb|CB681217.1|CB681217
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         C
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcag-
EST: gi|29684942|gb|CB681217.1|CB681217
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         C
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcag-
EST: gi|88663007|gb|CI474494.1|CI474494
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGCAG                       
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTT--C-Ggtgagtcatt ... acattagc
EST: gi|86872975|gb|CI326972.1|CI326972
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|33681150|gb|CF309389.1|CF309389
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|33675090|gb|CF303329.1|CF303329
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|88852696|gb|CI008889.1|CI008889
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|86435935|gb|CI107168.1|CI107168
EST:     GATTGATTACACTCCCAGAAACAGCCGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|88256514|gb|CI358902.1|CI358902
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|88258912|gb|CI359302.1|CI359302
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|88250785|gb|CI349015.1|CI349015
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGCAG                       
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTT--C-Ggtgagtcatt ... acattagc
EST: gi|15855565|gb|BI808377.1|BI808377
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACACGGAGCTGCACCAA-GCAATTCCTTGTATCTACCACTGGAGAGCACA
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACA-GGAGCTGCACCAAAGCAATTCCTTGTATCTACCA-TGGAGAGCA-A
EST: gi|87029164|gb|CI276432.1|CI276432
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|88257133|gb|CI359521.1|CI359521
EST:     AGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: AGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|33676087|gb|CF304326.1|CF304326
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|29662553|gb|CB658828.1|CB658828
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|88383490|gb|CI543263.1|CI543263
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|29683115|gb|CB679390.1|CB679390
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         C
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcag-
EST: gi|29683115|gb|CB679390.1|CB679390
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         C
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcag-
EST: gi|29683115|gb|CB679390.1|CB679390
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         C
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcag-
EST: gi|33672077|gb|CF300316.1|CF300316
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATTTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|89181923|gb|CI113429.1|CI113429
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|25806680|gb|CA762641.1|CA762641
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|86843718|gb|CI339709.1|CI339709
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|29663222|gb|CB659497.1|CB659497
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|86889949|gb|CI319938.1|CI319938
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|15854892|gb|BI807704.1|BI807704
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|86873804|gb|CI341237.1|CI341237
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|33675688|gb|CF303927.1|CF303927
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|86869681|gb|CI322167.1|CI322167
EST:     ATTGATTACACTCCCAGAAACAGCTGAGGGCTTGATTGAAGATCACTTCG                         C
genomic: ATTGATTACACTCCCAGAAACAGCTGA-GGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcag-
EST: gi|86869681|gb|CI322167.1|CI322167
EST:     ATTGATTACACTCCCAGAAACAGCTGAGGGCTTGATTGAAGATCACTTCG                         C
genomic: ATTGATTACACTCCCAGAAACAGCTGA-GGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcag-
EST: gi|86869681|gb|CI322167.1|CI322167
EST:     ATTGATTACACTCCCAGAAACAGCTGAGGGCTTGATTGAAGATCACTTCG                         C
genomic: ATTGATTACACTCCCAGAAACAGCTGA-GGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcag-
EST: gi|29615644|gb|CB620656.1|CB620656
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         C
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcag-
EST: gi|29615644|gb|CB620656.1|CB620656
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         C
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcag-
EST: gi|29615644|gb|CB620656.1|CB620656
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         C
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcag-
EST: gi|33675365|gb|CF303604.1|CF303604
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|88257341|gb|CI359729.1|CI359729
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|88259834|gb|CI364325.1|CI364325
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|33675509|gb|CF303748.1|CF303748
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|33675427|gb|CF303666.1|CF303666
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|86490518|gb|CI133151.1|CI133151
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|88253111|gb|CI351737.1|CI351737
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|88258920|gb|CI359310.1|CI359310
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|86505080|gb|CI147713.1|CI147713
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|88966192|gb|CI013068.1|CI013068
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|88257914|gb|CI360500.1|CI360500
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|88253931|gb|CI352557.1|CI352557
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|33672699|gb|CF300938.1|CF300938
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|86489048|gb|CI131681.1|CI131681
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
EST: gi|33675483|gb|CF303722.1|CF303722
EST:     GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCG                         GACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT
genomic: GATTGATTACACTCCCAGAAACAGCTGAGGCTTGATTGAAGATCACTTCGgtgagtcatt ... acattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcattttccttattttctcttaataatatgaaaaacaccaatttacattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGATGAACTTTTCATCTTGTGACAATCGTGTTGTGAAGCATCCTTTTTTATAC
                  tcttaat  putative branch site (score: 3)
          ttattttctcttaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ccattctcataggcgatgatatcttgcagcttgtatcttttcgatggcattttccttattttctcttaataatatgaaaaacaccaatttacattagcagGACAGGAGCTGCACCAAAGCAATTCCTTGTATCTACCATGGAGAGCAAGATGAACTTTTCATCTTGTGACAATCGTGTTGTGAAGCATCCTTTTTTATAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC