1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...ctttattatatttgttcaattttgtttttttctcctgttgatttatacctttctgtctcctgttgatttatggacaataataatgtagcatttcaaatagGTTTTCCCAAGATAAACTTTGGTACTTAGACCAGATGTTCAAGGTTTTATCTCTG
species | Oryza sativa |
transcript | LOC_Os06g07090.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAGGACTTCAAGGACGACCTCACAGCAAAGATATGCTCAATTGTTGAAAA GTTTTCCCAAGATAAACTTTGGTACTTAGACCAGATGTTCAAGGTTTTATCEST: gi|58654587|gb|CK043267.1|CK043267
genomic: CAGGACTTCAAGGACGACCTCACAGCAAAGATATGCTCAATTGTTGAAAAgtaagacttg ... tttcaaatagGTTTTCCCAAGATAAACTTTGGTACTTAGACCAGATGTTCAAGGTTTTATC
EST: CAGGACTTCAAGGACGACCTCACAGCAAAGATATGCTCAATTGTTGAAAA GTTTTCCCAAGATAAACTTTGGTACTTAGACCAGATGTTCAAGGTTTTATCEST: gi|29672354|gb|CB668629.1|CB668629
genomic: CAGGACTTCAAGGACGACCTCACAGCAAAGATATGCTCAATTGTTGAAAAgtaagacttg ... tttcaaatagGTTTTCCCAAGATAAACTTTGGTACTTAGACCAGATGTTCAAGGTTTTATC
EST: CAGGACTTCAAGGACGACCTCACAGCAAAGATATGCTCAATTGTTGAAAA GTTTTCCCAAGATAAACTTTGGTACTTAGACCAGATGTTCAAGGTTTTATCEST: gi|58673720|gb|CK062406.1|CK062406
genomic: CAGGACTTCAAGGACGACCTCACAGCAAAGATATGCTCAATTGTTGAAAAgtaagacttg ... tttcaaatagGTTTTCCCAAGATAAACTTTGGTACTTAGACCAGATGTTCAAGGTTTTATC
EST: CAGGACTTCAAGGACGACCTCACAGCAAAGATATGCTCAATTGTTGAAAA GTTTTCCCAAGATAAACTTTGGTACTTAGACCAGATGTTCAAGGTTTTATCEST: gi|58655701|gb|CK044381.1|CK044381
genomic: CAGGACTTCAAGGACGACCTCACAGCAAAGATATGCTCAATTGTTGAAAAgtaagacttg ... tttcaaatagGTTTTCCCAAGATAAACTTTGGTACTTAGACCAGATGTTCAAGGTTTTATC
EST: CAGGACTTCAAGGACGACCTCACAGCAAAGATATGCTCAATTGTTGAAAA GTTTTCCCAAGATAAACTTTGGTACTTAGACCAGATGT
genomic: CAGGACTTCAAGGACGACCTCACAGCAAAGATATGCTCAATTGTTGAAAAgtaagacttg ... tttcaaatagGTTTTCCCAAGATAAACTTTGGTACTTAGACCAGATGT
tacctttctgtctcctgttgatttatggacaataataatgtagcatttcaaatagGTTTTCCCAAGATAAACTTTGGTACTTAGACCAGATGTTCAAGGTTTTATCTCTG
tgttgat putative branch site (score: 4)
acaataataatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttattatatttgttcaattttgtttttttctcctgttgatttatacctttctgtctcctgttgatttatggacaataataatgtagcatttcaaatagGTTTTCCCAAGATAAACTTTGGTACTTAGACCAGATGTTCAAGGTTTTATCTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG