1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...atgctttcagctaagcttgtttactccagtacaggaaatactcatgtagcttcatgagcatgtgtttcatccaattttattttctattcttcatttgcagATTGTAAACTGGAGAAGTCACTTGAAATTCCCTGAAGAGGCAAAGCTTTCTCCTGAAGCTAAGGATCTCATCAGCAAACTTCTATGTAATGTTGAGCAGA
species | Oryza sativa |
transcript | LOC_Os05g43570.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTATTCGGAGGATCCAATGTCAACCTGCAGAAAG ATTGTAAACTGGAGAAGTCACTTGAAATTCCCTGAAGAGGCAAAGCTTTCT
genomic: CTATTCGGAGGATCCAATGTCAACCTGCAGAAAGgcatgtactt ... tcatttgcagATTGTAAACTGGAGAAGTCACTTGAAATTCCCTGAAGAGGCAAAGCTTTCT
gtagcttcatgagcatgtgtttcatccaattttattttctattcttcatttgcagATTGTAAACTGGAGAAGTCACTTGAAATTCCCTGAAGAGGCAAAGCTTTCTCCTGAAGCTAAGGATCTCATCAGCAAACTTCTATGTAATGTTGAGCAGA
ttttattttctattct CT-rich tract
aattttattttctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgctttcagctaagcttgtttactccagtacaggaaatactcatgtagcttcatgagcatgtgtttcatccaattttattttctattcttcatttgcagATTGTAAACTGGAGAAGTCACTTGAAATTCCCTGAAGAGGCAAAGCTTTCTCCTGAAGCTAAGGATCTCATCAGCAAACTTCTATGTAATGTTGAGCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
-tgctttc
- - - - - - - gcttgtt
- - - - - - - - - - - - - - - - aggaaata
- - - - - - - - - - - - - - - - - - - - -tcatgta
- - - - - - - - - - - - - - - - - - - - - - - - gcttcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gagcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttca