1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
...ttcctttttttaatcaaagagttcttcctgctatcatttctagtttgatgtttcagtaaaaaagatgatttgaatgactagttacagctatgatctgtagGCGGTTTCAAGGCAATTCTTTTCAAGGTCCAATTCCTTCTGCTCTTTCTAATCTTGTCCAACTATCAAGCTT
species | Oryza sativa |
transcript | LOC_Os04g52600.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTTACTGGACAAATACCAGATTATATCGGGAACTGGAATTTGACAGACCT GCGGTTTCAAGGCAATTCTTTTCAAGGTCCAATTCCTTCTGCTCTTTCTAAEST: gi|88302417|gb|CI668263.1|CI668263
genomic: TTTACTGGACAAATACCAGATTATATCGGGAACTGGAATTTGACAGACCTgtaagaatcc ... tgatctgtagGCGGTTTCAAGGCAATTCTTTTCAAGGTCCAATTCCTTCTGCTCTTTCTAA
EST: TTTACTGGACAAATACCAGATTATATCGGGAACTGGAATTTGACAGACCT GCGGTTTCAAGGCAATTCTTTTCAAGGTCCAATTCCTTCTGCTCTTTCTAAEST: gi|88570904|gb|CI662277.1|CI662277
genomic: TTTACTGGACAAATACCAGATTATATCGGGAACTGGAATTTGACAGACCTgtaagaatcc ... tgatctgtagGCGGTTTCAAGGCAATTCTTTTCAAGGTCCAATTCCTTCTGCTCTTTCTAA
EST: TTCACTGGACAAATACCACATTATATCGGGAACTGGAATTTGACAGACCT GCGGTTTCAAGGCAATTCTTTTCAAGGTCCAATTCCTTCTGCTCTTTCTAA
genomic: TTTACTGGACAAATACCAGATTATATCGGGAACTGGAATTTGACAGACCTgtaagaatcc ... tgatctgtagGCGGTTTCAAGGCAATTCTTTTCAAGGTCCAATTCCTTCTGCTCTTTCTAA
tgatgtttcagtaaaaaagatgatttgaatgactagttacagctatgatctgtagGCGGTTTCAAGGCAATTCTTTTCAAGGTCCAATTCCTTCTGCTCTTTCTAATCTTGTCCAACTATCAAGCTT
gtttgat putative branch site (score: 4)
taaaaaagatgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcctttttttaatcaaagagttcttcctgctatcatttctagtttgatgtttcagtaaaaaagatgatttgaatgactagttacagctatgatctgtagGCGGTTTCAAGGCAATTCTTTTCAAGGTCCAATTCCTTCTGCTCTTTCTAATCTTGTCCAACTATCAAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - -aatcaaa
- - - - - - - - - - - - - cctgcta
- - - - - - - - - - - - - - - - - - - - - - - - tgtttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacagct