1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...aacaagatcaaggaaatatgttttgtccaggccttttctaatgtcttctcctggttaccacttattattgtgctggtttactaacttcccttctctccagGCTACTGTATCAGCAGCTCCTTCGCTAAGTGTATCACAAGATCAAGCAGAGGAAACGGCTTCACAAGAAAGCAATCCTGAATCGGCACCACAGACACCAC
species | Oryza sativa |
transcript | LOC_Os03g44900.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTACTGCAGTTTTGAGTACGAAGAGTTCTGTAGCAACTTCACCTACTCAG GCTACTGTATCAGCAGCTCCTTCGCTAAGTGTATCACAAGATCAAGCAGAGEST: gi|58674781|gb|CK063468.1|CK063468
genomic: CTACTGCAGTTTTGAGTACGAAGAGTTCTGTAGCAACTTCACCTACTCAGgtattggcta ... ttctctccagGCTACTGTATCAGCAGCTCCTTCGCTAAGTGTATCACAAGATCAAGCAGAG
EST: CTACTGCAGTTTTGAGTACGAAGAGTTCTGTAGCAACTTCACCTACTCAG GCTACTGTATCAGCAGCTCCTTCGCTAAGTGTATCACAAGATCAAGCAGAGEST: gi|58667792|gb|CK056478.1|CK056478
genomic: CTACTGCAGTTTTGAGTACGAAGAGTTCTGTAGCAACTTCACCTACTCAGgtattggcta ... ttctctccagGCTACTGTATCAGCAGCTCCTTCGCTAAGTGTATCACAAGATCAAGCAGAG
EST: CTACTGCAGTTTTGAGTACGAAGAGTTCTGTAGCAACTTCACCTACTCAG GCTACTGTATCAGCAGCTCCTTCGCTAAGTGTATCACAAGATCAAGCAGAGEST: gi|58604983|gb|CK033016.1|CK033016
genomic: CTACTGCAGTTTTGAGTACGAAGAGTTCTGTAGCAACTTCACCTACTCAGgtattggcta ... ttctctccagGCTACTGTATCAGCAGCTCCTTCGCTAAGTGTATCACAAGATCAAGCAGAG
EST: GAAGAGTTCTGTAGCAACTTCACCTACTCAG GCTACTGTATCAGCAGCTCCTTCGCTAAGTGTATCACAAGATCAAGCAGAGEST: gi|218484250|gb|FG949587.1|FG949587
genomic: GAAGAGTTCTGTAGCAACTTCACCTACTCAGgtattggcta ... ttctctccagGCTACTGTATCAGCAGCTCCTTCGCTAAGTGTATCACAAGATCAAGCAGAG
EST: CTACTGCAGTTTTGAGTACGAAGAGTTCTGTAGCAACTTCACCTACTCAG GCTACTGTATCAGCAGCTCCTTCGCTAAGTGTATCACAAGATCAAGCAGAGEST: gi|29638285|gb|CB643294.1|CB643294
genomic: CTACTGCAGTTTTGAGTACGAAGAGTTCTGTAGCAACTTCACCTACTCAGgtattggcta ... ttctctccagGCTACTGTATCAGCAGCTCCTTCGCTAAGTGTATCACAAGATCAAGCAGAG
EST: CTACTGCAGTTTTGAGTACGAAGAGTTCTGTAGCAACTTCACCTACTCAG GCTACTGTATCAGCAGCTCCTTCGCTAAGTGTATCACAAGATCAAGCAGAGEST: gi|29630458|gb|CB635467.1|CB635467
genomic: CTACTGCAGTTTTGAGTACGAAGAGTTCTGTAGCAACTTCACCTACTCAGgtattggcta ... ttctctccagGCTACTGTATCAGCAGCTCCTTCGCTAAGTGTATCACAAGATCAAGCAGAG
EST: CTACTGCAGTTTTGAGTACGAAGAGTTCTGTAGCAACTTCACCTACTCAG GCTACTGTATCAGCAGCTCCTTCGCTAAGTGTATCACAAGATCAAGCAGAG
genomic: CTACTGCAGTTTTGAGTACGAAGAGTTCTGTAGCAACTTCACCTACTCAGgtattggcta ... ttctctccagGCTACTGTATCAGCAGCTCCTTCGCTAAGTGTATCACAAGATCAAGCAGAG
ttctcctggttaccacttattattgtgctggtttactaacttcccttctctccagGCTACTGTATCAGCAGCTCCTTCGCTAAGTGTATCACAAGATCAAGCAGAGGAAACGGCTTCACAAGAAAGCAATCCTGAATCGGCACCACAGACACCAC
tactaac putative branch site (score: 13)
tttactaacttccctt CT-rich tract
acttattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacaagatcaaggaaatatgttttgtccaggccttttctaatgtcttctcctggttaccacttattattgtgctggtttactaacttcccttctctccagGCTACTGTATCAGCAGCTCCTTCGCTAAGTGTATCACAAGATCAAGCAGAGGAAACGGCTTCACAAGAAAGCAATCCTGAATCGGCACCACAGACACCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
aacaaga
- - - - caaggaaa
- - - - - - - - - tgttttg
- - - - - - - - - - - - - ccaggcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgctgg