1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgaggcagcttttgcatatcagaattattgctagccatataattcatttttccatccttacatgttctacttttgatatatcaattcaatgcagAATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCTTAACCAAATGATGTTTTGCTGAGCTTAGAAGCCGCATCCGCCTCCCGCT
species | Oryza sativa |
transcript | LOC_Os03g44660.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCGAGAAATCTCTAAAAGATTACTCCGAGGCATTTGATATTGTCTACTTG AATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCTEST: gi|163927859|gb|EG714239.1|EG714239
genomic: TCGAGAAATCTCTAAAAGATTACTCCGAGGCATTTGATATTGTCTACTTGgtgaggcagc ... ttcaatgcagAATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCT
EST: TCGAGAAATCTCTAAAAGATTACTCCGAGGCATTTGATATTGTCTACTTG AATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCTEST: gi|88557502|gb|CI487915.1|CI487915
genomic: TCGAGAAATCTCTAAAAGATTACTCCGAGGCATTTGATATTGTCTACTTGgtgaggcagc ... ttcaatgcagAATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCT
EST: TCGAGAAATCTCTAAAAGATTACTCCGAGGCATTTGATATTGTCTACTTG AATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCTEST: gi|88545586|gb|CI475155.1|CI475155
genomic: TCGAGAAATCTCTAAAAGATTACTCCGAGGCATTTGATATTGTCTACTTGgtgaggcagc ... ttcaatgcagAATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCT
EST: TCGAGAAATCTCTAAAAGATTACTCCGAGGCATTTGATATTGTCTACTTG AATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCTEST: gi|163920287|gb|EG709539.1|EG709539
genomic: TCGAGAAATCTCTAAAAGATTACTCCGAGGCATTTGATATTGTCTACTTGgtgaggcagc ... ttcaatgcagAATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCT
EST: TCGAGAAATCTCTAAAAGATTACTCCGAGGCATTTGATATTGTCTACTTG AATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCTEST: gi|88830004|gb|CI074676.1|CI074676
genomic: TCGAGAAATCTCTAAAAGATTACTCCGAGGCATTTGATATTGTCTACTTGgtgaggcagc ... ttcaatgcagAATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCT
EST: TCGAGAAATCTCTAAAAGATTACTCCGAGGCATTTGATATTGTCTACTTG AATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCTEST: gi|88551563|gb|CI481630.1|CI481630
genomic: TCGAGAAATCTCTAAAAGATTACTCCGAGGCATTTGATATTGTCTACTTGgtgaggcagc ... ttcaatgcagAATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCT
EST: TCGAGAAATCTCTAAAAGATTACTCCGAGGCATTTGATATTGTCTACTTG AATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCTEST: gi|25806219|gb|CA762180.1|CA762180
genomic: TCGAGAAATCTCTAAAAGATTACTCCGAGGCATTTGATATTGTCTACTTGgtgaggcagc ... ttcaatgcagAATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCT
EST: TCGAGAAATCTCTAAAAGATTACTCCGAGGCATTTGATATTGTCTACTTG AATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCTEST: gi|88839839|gb|CI017604.1|CI017604
genomic: TCGAGAAATCTCTAAAAGATTACTCCGAGGCATTTGATATTGTCTACTTGgtgaggcagc ... ttcaatgcagAATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCT
EST: TCGAGAAATCTCTAAAAGATTACTCCGAGGCATTTGATATTGTCTACTTG AATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCTEST: gi|86498135|gb|CI140768.1|CI140768
genomic: TCGAGAAATCTCTAAAAGATTACTCCGAGGCATTTGATATTGTCTACTTGgtgaggcagc ... ttcaatgcagAATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCT
EST: TCGAGAAATCTTTAAAAGATTACTCCGAGGCATTTGATATTGTCTACTTG AATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCTEST: gi|86864180|gb|CI334017.1|CI334017
genomic: TCGAGAAATCTCTAAAAGATTACTCCGAGGCATTTGATATTGTCTACTTGgtgaggcagc ... ttcaatgcagAATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCT
EST: TCGAGAAATCTCTAAAAGATTACTCCGAGGCATTTGATATTGTCTACTTG AATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCTEST: gi|88556421|gb|CI486745.1|CI486745
genomic: TCGAGAAATCTCTAAAAGATTACTCCGAGGCATTTGATATTGTCTACTTGgtgaggcagc ... ttcaatgcagAATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCT
EST: TCGAGAAATCTCTAAAAGATTACTCCGAGGCATTTGATATTGTCTACTTG AATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCT
genomic: TCGAGAAATCTCTAAAAGATTACTCCGAGGCATTTGATATTGTCTACTTGgtgaggcagc ... ttcaatgcagAATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCT
taattcatttttccatccttacatgttctacttttgatatatcaattcaatgcagAATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCTTAACCAAATGATGTTTTGCTGAGCTTAGAAGCCGCATCCGCCTCCCGCT
ttttgatatatcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggcagcttttgcatatcagaattattgctagccatataattcatttttccatccttacatgttctacttttgatatatcaattcaatgcagAATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCTTAACCAAATGATGTTTTGCTGAGCTTAGAAGCCGCATCCGCCTCCCGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC