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...tgaaaccatgaagcagcatgaatatgtcactaattgatggatccaaaatgtttgtcttatgaaatgcaacattacagttatatgctgtctactggtacagGAAATGGAACGCTCTGCCGATGTGCTGTCCGCTGGTTTATTAGAAGTTGCAAATCCTTCCCTCTCAAGTAGGTTCTTCCTGAAGCAG
species | Oryza sativa |
transcript | LOC_Os03g19690.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GATTTCATGTTCGTACCAAACCATATTTGGATGGAGCAATACTCAGAGAG GAAATGGAACGCTCTGCCGATGTGCTGTCCGCTGGTTTATTAGAAGTTGCAEST: gi|88353923|gb|CI634714.1|CI634714
genomic: GATTTCATGTTCGTACCAAACCATATTTGGATGGAGCAATACTCAGAGAGgtttgttgga ... actggtacagGAAATGGAACGCTCTGCCGATGTGCTGTCCGCTGGTTTATTAGAAGTTGCA
EST: GATTTCATGTTCGTACCAAACCATATTTGGATGGAGCAATACTCAGAGAG GAAATGGAACGCTCTGCCGATGTGCTGTCCGCTGGTTTATTAGAAGTTGCAEST: gi|88298188|gb|CI558593.1|CI558593
genomic: GATTTCATGTTCGTACCAAACCATATTTGGATGGAGCAATACTCAGAGAGgtttgttgga ... actggtacagGAAATGGAACGCTCTGCCGATGTGCTGTCCGCTGGTTTATTAGAAGTTGCA
EST: GATTTCATGTTCGTACCAAACCATATTTGGATGGAGCAATACTCAGAGAG GAAATGGAACGCTCTGCCGATGTGCTGTCCGCTGGTTTATTAGAAGTTGCAEST: gi|29671022|gb|CB667297.1|CB667297
genomic: GATTTCATGTTCGTACCAAACCATATTTGGATGGAGCAATACTCAGAGAGgtttgttgga ... actggtacagGAAATGGAACGCTCTGCCGATGTGCTGTCCGCTGGTTTATTAGAAGTTGCA
EST: GATTTCATGTTCGTACCAAACCATATTTGGATGGAGCAATACTCAGAGAG GAAATGGAACGCTCTGCCGATGTGCTGTCCGCTGGTTTATTAGAAGTTGCA
genomic: GATTTCATGTTCGTACCAAACCATATTTGGATGGAGCAATACTCAGAGAGgtttgttgga ... actggtacagGAAATGGAACGCTCTGCCGATGTGCTGTCCGCTGGTTTATTAGAAGTTGCA
aaatgtttgtcttatgaaatgcaacattacagttatatgctgtctactggtacagGAAATGGAACGCTCTGCCGATGTGCTGTCCGCTGGTTTATTAGAAGTTGCAAATCCTTCCCTCTCAAGTAGGTTCTTCCTGAAGCAG
ttatgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaaaccatgaagcagcatgaatatgtcactaattgatggatccaaaatgtttgtcttatgaaatgcaacattacagttatatgctgtctactggtacagGAAATGGAACGCTCTGCCGATGTGCTGTCCGCTGGTTTATTAGAAGTTGCAAATCCTTCCCTCTCAAGTAGGTTCTTCCTGAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - -ccatgaa
- - - - - - - -gcatgaa
- - - - - - - - - - - - - - - - -ttgatgg
- - - - - - - - - - - - - - - - - - - - -tccaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgtc