1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtactcttctgataccacattcaccatttggaatcttttgtttggatctttggcataacatcggtagaggatgtgtcatttggatgatagtttgttttgtttttctgcagGAGAATAACTGATCGGCTTAAGTTCAACGTTTTGTAGTTCTCTTCATGACACATACTGGTGCTGCCTGGTGAAAAAATAGAGTTCAG
species | Oryza sativa |
transcript | LOC_Os02g52360.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CATTTTCTAGGATGTTCCAACCATCAGGAGGTTCAGAGAAGATCGATGAA GAGAATAACTGATCGGCTTAAGTTCAACGTTTTGTAGTTCTCTTCATGACAEST: gi|86500986|gb|CI143619.1|CI143619
genomic: CATTTTCTAGGATGTTCCAACCATCAGGAGGTTCAGAGAAGATCGATGAAgtactcttct ... ttttctgcagGAGAATAACTGATCGGCTTAAGTTCAACGTTTTGTAGTTCTCTTCATGACA
EST: CATTTTCTAGGATGTTCCAACCATCAGGAGGTTCAGAGAAGATCGATGAA GAGAATAACTGATCGGCTTAAGTTCAACGTTTTGTAGTTCTCTTCATGACAEST: gi|87028837|gb|CI349556.1|CI349556
genomic: CATTTTCTAGGATGTTCCAACCATCAGGAGGTTCAGAGAAGATCGATGAAgtactcttct ... ttttctgcagGAGAATAACTGATCGGCTTAAGTTCAACGTTTTGTAGTTCTCTTCATGACA
EST: CATTTTCTAGGATGTTCCAACCATCAGGAGGTTCAGAGAAGATCGATGAA GAGAATAACTGATCGGCTTAAGTTCAACGTTTTGTAGTTCTCTTCATGACAEST: gi|58652761|gb|CK041441.1|CK041441
genomic: CATTTTCTAGGATGTTCCAACCATCAGGAGGTTCAGAGAAGATCGATGAAgtactcttct ... ttttctgcagGAGAATAACTGATCGGCTTAAGTTCAACGTTTTGTAGTTCTCTTCATGACA
EST: CATTTTCTAGGATGTTCCAACCATCAGGAGGTTCAGAGAAGATCGATGAA GAGAATAACTGATCGGCTTAAGTTCAACGTTTTGTAGTTCTCTTCATGACA
genomic: CATTTTCTAGGATGTTCCAACCATCAGGAGGTTCAGAGAAGATCGATGAAgtactcttct ... ttttctgcagGAGAATAACTGATCGGCTTAAGTTCAACGTTTTGTAGTTCTCTTCATGACA
taacatcggtagaggatgtgtcatttggatgatagtttgttttgtttttctgcagGAGAATAACTGATCGGCTTAAGTTCAACGTTTTGTAGTTCTCTTCATGACACATACTGGTGCTGCCTGGTGAAAAAATAGAGTTCAG
gcataac putative branch site (score: 7)
tttgttttgtttttct putative PPT
tttgttttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactcttctgataccacattcaccatttggaatcttttgtttggatctttggcataacatcggtagaggatgtgtcatttggatgatagtttgttttgtttttctgcagGAGAATAACTGATCGGCTTAAGTTCAACGTTTTGTAGTTCTCTTCATGACACATACTGGTGCTGCCTGGTGAAAAAATAGAGTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC