1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagacaagctatacatatagctatttctaacgcgcattgagaagcatctagtgcttgttctcactgtttgtcctgaactttcttgatacagGTCTGGCAGTTATAACTGTTATGCTTGTTACCACTTGTTTAATGTCACTGGTCATTGTGCTTTGCTGGAACAAAAGTATCTTCCTTGCGCTCGGTTTCCT
species | Oryza sativa |
transcript | LOC_Os02g49760.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGCTGTTACTCTTGGCTTCAGAAACACGAAACATTTGGCAAATGCACAAG GTCTGGCAGTTATAACTGTTATGCTTGTTACCACTTGTTTAATGTCACTGGEST: gi|58690775|gb|CK079462.1|CK079462
genomic: GGCTGTTACTCTTGGCTTCAGAAACACGAAACATTTGGCAAATGCACAAGgtaagacaag ... cttgatacagGTCTGGCAGTTATAACTGTTATGCTTGTTACCACTTGTTTAATGTCACTGG
EST: GGCTGTTACTCTTGGCTTCAGAAACACGAAACATTTGGCAAATGCACAAG GTCTGGCAGTTATAACTGTTATGCTTGTTACCACTTGTTTAATGTCACTGGEST: gi|58683374|gb|CK072061.1|CK072061
genomic: GGCTGTTACTCTTGGCTTCAGAAACACGAAACATTTGGCAAATGCACAAGgtaagacaag ... cttgatacagGTCTGGCAGTTATAACTGTTATGCTTGTTACCACTTGTTTAATGTCACTGG
EST: GGCTGTTACTCTTGGCTTCAGAAACACGAAACATTTGGCAAATGCACAAG GTCTGGCAGTTATAACTGTTATGCTTGTTACCACTTGTTTAATGTCACTGGEST: gi|58610060|gb|CK038093.1|CK038093
genomic: GGCTGTTACTCTTGGCTTCAGAAACACGAAACATTTGGCAAATGCACAAGgtaagacaag ... cttgatacagGTCTGGCAGTTATAACTGTTATGCTTGTTACCACTTGTTTAATGTCACTGG
EST: GGCTGTTACTCTTGGCTTCAGAAACACGAAACATTTGGGAAATGCACAAG GTCTGGCAGTTATAACTGTTATGCTTGTTACCACTTGTTTAATGTCACTGGEST: gi|58604945|gb|CK032978.1|CK032978
genomic: GGCTGTTACTCTTGGCTTCAGAAACACGAAACATTTGGCAAATGCACAAGgtaagacaag ... cttgatacagGTCTGGCAGTTATAACTGTTATGCTTGTTACCACTTGTTTAATGTCACTGG
EST: GGCTGTTACTCTTGGATTCAGAAACACGAAACATTTGGCAAATGCACAAG GTCTGGCAGTTATAACTGEST: gi|58669182|gb|CK057868.1|CK057868
genomic: GGCTGTTACTCTTGGCTTCAGAAACACGAAACATTTGGCAAATGCACAAGgtaagacaag ... cttgatacagGTCTGGCAGTTATAACTG
EST: GGCTGTTACTCTTGGCTTCAGAAACACGAAACATTTGGCAAATGCACAAG GTCTGGCAGTTATAACTGTTATGCTTGTTACCACTTGTTTAATGTCACTGG
genomic: GGCTGTTACTCTTGGCTTCAGAAACACGAAACATTTGGCAAATGCACAAGgtaagacaag ... cttgatacagGTCTGGCAGTTATAACTGTTATGCTTGTTACCACTTGTTTAATGTCACTGG
ttgagaagcatctagtgcttgttctcactgtttgtcctgaactttcttgatacagGTCTGGCAGTTATAACTGTTATGCTTGTTACCACTTGTTTAATGTCACTGGTCATTGTGCTTTGCTGGAACAAAAGTATCTTCCTTGCGCTCGGTTTCCT
ctttctt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagacaagctatacatatagctatttctaacgcgcattgagaagcatctagtgcttgttctcactgtttgtcctgaactttcttgatacagGTCTGGCAGTTATAACTGTTATGCTTGTTACCACTTGTTTAATGTCACTGGTCATTGTGCTTTGCTGGAACAAAAGTATCTTCCTTGCGCTCGGTTTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA