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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgtttatgttatgagacaaataatcacctagaggacctcccgtgcatcgttattcgtcttcgctgatgtaaatatttgacctcgcttttgttgctgcagCATCATTCGTGATATCATTCAGAACCATTTGTTGCAG

Basic information

species Oryza sativa
transcript LOC_Os02g38840.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g38840.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G031107_T01 (Zea mays), 3'ss of exon 8
gtgtttatgttatgagacaaataatcacctagaggacctcccgtgcatcgttattcgtctt--cgctga-tgtaaatatttgacctcgcttttgttgctgcagCATCATTCGTGATATCATTCAGAACCATTTGTTGCAG
  |    |||           |  |||| | |||| |||||  ||  | | | ||  ||||   ||  | |     ||| ||||  | ||||||||| ||||| |||||||||||||||||||||||||| |||||||||
--gcaattgtccgttatttttttgtcactttgagggcctcc-atgtgttgctctttatcttattgcaaaatactcgtatctgactccacttttgttgatgcagTATCATTCGTGATATCATTCAGAACCACTTGTTGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catcgttattcgtcttcgctgatgtaaatatttgacctcgcttttgttgctgcagCATCATTCGTGATATCATTCAGAACCATTTGTTGCAG
                             atttgac  putative branch site (score: 4)
                                        cttttgtt  putative PPT
                   tgatgtaaatattt  TA-rich tract