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gtaactatttgtttttatttactttcaactatcaatttatttttaaatttttttgtaataatttaccaatctgtggtttccagAATGTAACTGATGATGGCCTTTCATGTATATCAAGATGTGTATGTCTGACATATCTCAATTTGTCCTG
species | Oryza sativa |
transcript | LOC_Os02g17990.4 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGATAGGATCTTTAACTAACCTTACATTTCTAGACTTATGTGGGGCCCAG AATGTAACTGATGATGGCCTTTCATGTATATCAAGATGTGTATGTCTGACAEST: gi|88238513|gb|CI238362.1|CI238362
genomic: AGATAGGATCTTTAACTAACCTTACATTTCTAGACTTATGTGGGGCCCAGgtaactattt ... tggtttccagAATGTAACTGATGATGGCCTTTCATGTATATCAAGATGTGTATGTCTGACA
EST: CTAGACTTATGTGGGGCCCAG AATGTAACTGATGATGGCCTTTCATGTATATCAAGATGTGTATGTCTGACAEST: gi|29668175|gb|CB664450.1|CB664450
genomic: CTAGACTTATGTGGGGCCCAGgtaactattt ... tggtttccagAATGTAACTGATGATGGCCTTTCATGTATATCAAGATGTGTATGTCTGACA
EST: AGATAGGATCTTTAACTAACCTTACATTTCTAGACTTATGTGGGGCCCAG AATGTAACTGATGATGGCCTTTCATGTATATCAAGATGTGTATGTCTGACAEST: gi|38479296|gb|CF963429.1|CF963429
genomic: AGATAGGATCTTTAACTAACCTTACATTTCTAGACTTATGTGGGGCCCAGgtaactattt ... tggtttccagAATGTAACTGATGATGGCCTTTCATGTATATCAAGATGTGTATGTCTGACA
EST: AACTAACCTTACATTTCTAGACTTATGTGGGGCCCAG AATGTAACTGATGATGGCCTTTCATGTATATCAAGATGTGTATGTCTGACA
genomic: AACTAACCTTACATTTCTAGACTTATGTGGGGCCCAGgtaactattt ... tggtttccagAATGTAACTGATGATGGCCTTTCATGTATATCAAGATGTGTATGTCTGACA
ctatcaatttatttttaaatttttttgtaataatttaccaatctgtggtttccagAATGTAACTGATGATGGCCTTTCATGTATATCAAGATGTGTATGTCTGACATATCTCAATTTGTCCTG
tttcc CT-rich tract
aatttatttttaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactatttgtttttatttactttcaactatcaatttatttttaaatttttttgtaataatttaccaatctgtggtttccagAATGTAACTGATGATGGCCTTTCATGTATATCAAGATGTGTATGTCTGACATATCTCAATTTGTCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG