1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgcaatcttttctccttgcagcaaaaacaaagttggaatagatcacagattttaccaccattattccaacttacatcacatcatttgttcacagATGAAAGGGTTGACGGTGGCCATGGTCGGCGACGGGATAAACGACTCGCCGGCTCTAGCCGCTGCAGACGTAGGCCTGGCGATTGGGGCTGGAACCGACG
species | Oryza sativa |
transcript | LOC_Os02g10290.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTGCCGAGATCGATCCAGTTGGTAAAGCCGAAAAGATCAAGGACTTGCAG ATGAAAGGGTTGACGGTGGCCATGGTCGGCGACGGGATAAACGACTCGCCGEST: gi|86597820|gb|CI276606.1|CI276606
genomic: TTGCCGAGATCGATCCAGTTGGTAAAGCCGAAAAGATCAAGGACTTGCAGgtgcaatctt ... ttgttcacagATGAAAGGGTTGACGGTGGCCATGGTCGGCGACGGGATAAACGACTCGCCG
EST: TTGCCGAGATCGATCCAGTTGGTAAAGCCGAAAAGATCAAGGACTTGCAG ATGAAAGGGTTGACGGTGGCCATGGTCGGCGACGGGATAAACGACTCGCCGEST: gi|29668833|gb|CB665108.1|CB665108
genomic: TTGCCGAGATCGATCCAGTTGGTAAAGCCGAAAAGATCAAGGACTTGCAGgtgcaatctt ... ttgttcacagATGAAAGGGTTGACGGTGGCCATGGTCGGCGACGGGATAAACGACTCGCCG
EST: TTGCCGAGATCGATCCAGTTGGTAAAGCCGAAAAGATCAAGGACTTGCAG ATGAAAGGGTTGACGGTGGCCATGGTCGGCGACGGGATAAACGACTCGCCGEST: gi|87027319|gb|CI269994.1|CI269994
genomic: TTGCCGAGATCGATCCAGTTGGTAAAGCCGAAAAGATCAAGGACTTGCAGgtgcaatctt ... ttgttcacagATGAAAGGGTTGACGGTGGCCATGGTCGGCGACGGGATAAACGACTCGCCG
EST: GGTAAAGCCGAAAAGATCAAGGACTTGCAG ATGAAAGGGTTGACGGTGGCCATGGTCGGCGACGGGATAAACGACTCGCCGEST: gi|29664512|gb|CB660787.1|CB660787
genomic: GGTAAAGCCGAAAAGATCAAGGACTTGCAGgtgcaatctt ... ttgttcacagATGAAAGGGTTGACGGTGGCCATGGTCGGCGACGGGATAAACGACTCGCCG
EST: TTGCCGAGATCGATCCAGTTGGTAAAGCCGAAAAGATCAAGGACTTGCAG ATGAAAGGGTTGACGGTGGCCATGGTCGGCGACGGGATAAACGACTCGCCGEST: gi|29637742|gb|CB642751.1|CB642751
genomic: TTGCCGAGATCGATCCAGTTGGTAAAGCCGAAAAGATCAAGGACTTGCAGgtgcaatctt ... ttgttcacagATGAAAGGGTTGACGGTGGCCATGGTCGGCGACGGGATAAACGACTCGCCG
EST: TTGCCGAGATCGATCCAGTTGGTAAAGCCGAAAAGATCAAGGACTTGCAG ATGAAAGGGTTGACGGTGGCCATGGTCGGCGACGGGATAAACGACTCGCCGEST: gi|86481408|gb|CI124041.1|CI124041
genomic: TTGCCGAGATCGATCCAGTTGGTAAAGCCGAAAAGATCAAGGACTTGCAGgtgcaatctt ... ttgttcacagATGAAAGGGTTGACGGTGGCCATGGTCGGCGACGGGATAAACGACTCGCCG
EST: ATCCAGTTGGTAAAGCCGAAAAGATCAAGGACTTGCAG ATGAAAGGGTTGACGGTGGCCATGGTCGGCGACGGGATAAACGACTCGCCGEST: gi|66924645|gb|CX111493.1|CX111493
genomic: ATCCAGTTGGTAAAGCCGAAAAGATCAAGGACTTGCAGgtgcaatctt ... ttgttcacagATGAAAGGGTTGACGGTGGCCATGGTCGGCGACGGGATAAACGACTCGCCG
EST: TTGCCGAGATCGATCCAGTTGGTAAAGCCGAAAAGATCAAGGACTTGCAG ATGAAAGGGTTGACGGTGGCCATGGTCGGCGACGGGATAAACGACTCGCCGEST: gi|29680252|gb|CB676527.1|CB676527
genomic: TTGCCGAGATCGATCCAGTTGGTAAAGCCGAAAAGATCAAGGACTTGCAGgtgcaatctt ... ttgttcacagATGAAAGGGTTGACGGTGGCCATGGTCGGCGACGGGATAAACGACTCGCCG
EST: TTGCCGAGATCGATCCAGTTGGTAAAGCCGAAAAGATCAAGGACTTGCAG ATGAAAGGGTTGACGGTGGCCATGGTCGGCGACGGGATAAACGACTCGCCG
genomic: TTGCCGAGATCGATCCAGTTGGTAAAGCCGAAAAGATCAAGGACTTGCAGgtgcaatctt ... ttgttcacagATGAAAGGGTTGACGGTGGCCATGGTCGGCGACGGGATAAACGACTCGCCG
agatcacagattttaccaccattattccaacttacatcacatcatttgttcacagATGAAAGGGTTGACGGTGGCCATGGTCGGCGACGGGATAAACGACTCGCCGGCTCTAGCCGCTGCAGACGTAGGCCTGGCGATTGGGGCTGGAACCGACG
aacttac putative branch site (score: 18)
tttgttc putative PPT
agatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcaatcttttctccttgcagcaaaaacaaagttggaatagatcacagattttaccaccattattccaacttacatcacatcatttgttcacagATGAAAGGGTTGACGGTGGCCATGGTCGGCGACGGGATAAACGACTCGCCGGCTCTAGCCGCTGCAGACGTAGGCCTGGCGATTGGGGCTGGAACCGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA