1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtagatcattgtgaagttgggtacagtattagtgtcacaaatatcgtcttcgaaagtactaactgtttctatctgtgcatcactgcagACCTGTATGCACCTCTTCCTCCAAAGATATACTGGCACATCCAAGGAAACGGGGATATAGGTAAACAAAAAGAGGACGACTCACTTCCCTGTGACATTAT
species | Oryza sativa |
transcript | LOC_Os01g65310.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TACTCTTGTGCTACACTCTACTAGAGAACCTGATCAAACTCTTTCGGCAG ACCTGTATGCACCTCTTCCTCCAAAGATATACTGGCACATCCAAGGAAACGEST: gi|87029382|gb|CI250315.1|CI250315
genomic: TACTCTTGTGCTACACTCTACTAGAGAACCTGATCAAACTCTTTCGGCAGgtagatcatt ... atcactgcagACCTGTATGCACCTCTTCCTCCAAAGATATACTGGCACATCCAAGGAAACG
EST: TACTCTTGTGCTACACTCTACTAGAGAACCTGATCAAACTCTTTCGGCAG ACCTGTATGCACCTCTTCCTCCAAAGATATACTGGCACATCCAAGGAAACGEST: gi|29676149|gb|CB672424.1|CB672424
genomic: TACTCTTGTGCTACACTCTACTAGAGAACCTGATCAAACTCTTTCGGCAGgtagatcatt ... atcactgcagACCTGTATGCACCTCTTCCTCCAAAGATATACTGGCACATCCAAGGAAACG
EST: TACTCTTGTGCTACACTCTACTAGAGAACCTGATCAAACTCTTTCGGCAG ACCTGTATGCACCTCTTCCTCCAAAGATATACTGGCACATCCAAGGAAACGEST: gi|86592306|gb|CI250960.1|CI250960
genomic: TACTCTTGTGCTACACTCTACTAGAGAACCTGATCAAACTCTTTCGGCAGgtagatcatt ... atcactgcagACCTGTATGCACCTCTTCCTCCAAAGATATACTGGCACATCCAAGGAAACG
EST: TGCTACACTCTACTAGAGAACCTGATCAAACTCTTTCGGCAG ACCTGTATGCACCTCTTCCTCCAAAGATATACTGGCACATCCAAGGAAACGEST: gi|218484594|gb|FG954369.1|FG954369
genomic: TGCTACACTCTACTAGAGAACCTGATCAAACTCTTTCGGCAGgtagatcatt ... atcactgcagACCTGTATGCACCTCTTCCTCCAAAGATATACTGGCACATCCAAGGAAACG
EST: TACTCTTGTGCTACACTCTACTAGAGAACCTGATCAAACTCTTTCGGCAG ACCTGTATGCACCTCTTCCTCCAAAGATATACTGGCACATCCAAGGAAACG
genomic: TACTCTTGTGCTACACTCTACTAGAGAACCTGATCAAACTCTTTCGGCAGgtagatcatt ... atcactgcagACCTGTATGCACCTCTTCCTCCAAAGATATACTGGCACATCCAAGGAAACG
gtcacaaatatcgtcttcgaaagtactaactgtttctatctgtgcatcactgcagACCTGTATGCACCTCTTCCTCCAAAGATATACTGGCACATCCAAGGAAACGGGGATATAGGTAAACAAAAAGAGGACGACTCACTTCCCTGTGACATTAT
tactaac putative branch site (score: 19)
aaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagatcattgtgaagttgggtacagtattagtgtcacaaatatcgtcttcgaaagtactaactgtttctatctgtgcatcactgcagACCTGTATGCACCTCTTCCTCCAAAGATATACTGGCACATCCAAGGAAACGGGGATATAGGTAAACAAAAAGAGGACGACTCACTTCCCTGTGACATTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA