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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatactcactatttccgtgtgattgtattttttttttgttatttaaggaagagcttatgcagtagcatatcttttgtgcagGAAATAAGACGCATTAAACCAGTACCTAAACTTGCTTGCCATAGTGTTGCATCGTGGTGTCATCCTCGTGCACCAAACCTTGATATTCTGACTTGTGTCA

Basic information

species Oryza sativa
transcript LOC_Os01g46510.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g46510.2 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G000177_T01 (Zea mays), 3'ss of exon 8
----gtatactcactatttccgtgtgattgtattttttttttgttatttaaggaagagcttatgcagtagcatatcttttgtgcagGAAATAAGACGCATTAAACCAGTACCTAAACTTGCTTGCCATAGTGTTGCATCGTGGTGTCATCCTCGTGCACCAAACCTTGATATTCTGACTTGTGTCA
     |||| | | ||||| | ||   || |||| |||     |||||| | | ||||||||   |||| || || |  ||  ||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
gtacttata-taaatatttgcatgaagttatattattt----attatttcaagtagagcttaa--agtaacacatttgctgctcagGAAATAAGGCGCATTAAGCCAGTGCCTAAACTTGCTTGTCATAGTGTTGCATCGTGGTGTCATCCCCGTGCACCAAACCTTGATATTCTAACTTGTGTCA

upper sequence: LOC_Os01g46510.2 (Oryza sativa), 3'ss of exon 8
lower sequence: GLYMA19G41130.1 (Glycine max), 3'ss of exon 8
---------------gtatactcactatttccgtgtgattgt-attttttttttgttatttaaggaagagcttatgcagtagcatatcttttgtgcagGAAATAAGACGCATTAAACCAGTACCTAAACTTGCTTGCCATAGTGTTGCATCGTGGTGTCATCCTCGTGCACCAAACCTTGATATTCTGACTTGTGTCA
                 || |       ||     |  |||| |   || |  || ||  || | ||||  |        |     | |  |   |||||  |  | || || || ||||| || ||| | |||||||| ||||| || || ||||| |||||||| || ||||||||||||||||| ||||| ||||
gtgtggtagtggggctaatgcctggctattttaaatttttgtgaaaattctcctggtaacta-gaaagacttagcatgaaaaagcttttgattctcagGAGCTGCGGCGTATAAAGCCAGTTCCCAAATTGGCTTGCCACAGTGTGGCTTCTTGGTGCCATCCTCGAGCTCCAAACCTTGATATTCTAACTTGCGTCA

upper sequence: LOC_Os01g46510.2 (Oryza sativa), 3'ss of exon 8
lower sequence: GLYMA03G38530.1 (Glycine max), 3'ss of exon 8
-----gtatactcactatttccgtgtgattgtattttttt--------tttgttatttaaggaagagctta-tgcagtagcatatcttttgtgcagGAAATAAGACGCATTAAACCAGTACCTAAACTTGCTTGCCATAGTGTTGCATCGTGGTGTCATCCTCGTGCACCAAACCTTGATATTCTGACTTGTGTCA
     |||      ||| | |   |  ||| || ||||||        | |  |  | |  |||   |||| ||    |     | |  |   |||||  |  | || || || ||||| || ||| | |||||||| ||||| || || |||||||||||||| || ||||||||||||||||| ||||| ||||
gtgtggtagtggtgctaatgcttggctattttaattttttgtgaaaattctcctggtaatagaaagacttagtgtgaaaaagcttttgattcccagGAGCTGCGGCGTATAAAGCCAGTTCCCAAATTGGCTTGCCACAGTGTGGCTTCTTGGTGTCATCCTCGAGCTCCAAACCTTGATATTCTAACTTGCGTCA

upper sequence: LOC_Os01g46510.2 (Oryza sativa), 3'ss of exon 8
lower sequence: AT5G24710.1 (Arabidopsis thaliana), 3'ss of exon 8
gtatactcactatttccgtgtgattgtattttttttttgttatttaaggaagagcttatgcagtagcatatcttttgtgcagGAAATAAGACGCATTAAACCAGTACCTAAACTTGCTTGCCATAGTGTTGCATCGTGGTGTCATCCTCGTGCACCAAACCTTGATATTCTGACTTGTGTCA
|||          |   || ||  | | |  | ||||    || | |   |      |||||     |  | | || | |||||  || |  | |||||||| || || ||||| |||||||| ||||||||||| |||||||| ||||| || ||||||||||||||| ||||||| || |
gtaatggtgtatctcatgtatggatttttcatattttcccgatctcatttattaac-atgcatatctacttttattctacagGAGCTACGTAGAATTAAACCTGTCCCGAAACTAGCTTGCCACAGTGTTGCATCTTGGTGTCACCCTCGAGCGCCAAACCTTGATATTTTGACTTGCGTTA

upper sequence: LOC_Os01g46510.2 (Oryza sativa), 3'ss of exon 8
lower sequence: Vv08s0056g00040.t01 (Vitis vinifera), 3'ss of exon 9
------------------------------------gtatactcactatttccgtgtgattgtattttttttttgttatttaaggaagagcttatgcagtagcatatcttttgtgcagGAAATAAGACGCATTAAACCAGTACCTAAACTTGCTTGCCATAGTGTTGCATCGTGGTGTCATCCTCGTGCACCAAACCTTGATATTCTGACTTGTGTCA
                                     |||    |       | | | |||| |   |  | |||   ||| || | ||  || | | ||    | ||| || |  ||||  |  | || || ||||| || || || || |||||||||||||| || || ||||| || ||||| || ||||||||||||||  | ||||||||||
gtggtgtattaatgttctgaaacttcttgatttagcttatgaaaaagcacatcatctaattggaaactagtgttggagtttcagcatgattttcttctgtg---tttctcttat-tagGAGTTGCGGCGAATCAAACCTGTTCCAAAGCTGGCTTGCCATAGTGTGGCGTCTTGGTGCCACCCTCGAGCTCCAAACCTTGATATCTTAACTTGTGTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttttttttgttatttaaggaagagcttatgcagtagcatatcttttgtgcagGAAATAAGACGCATTAAACCAGTACCTAAACTTGCTTGCCATAGTGTTGCATCGTGGTGTCATCCTCGTGCACCAAACCTTGATATTCTGACTTGTGTCA
                                         tatctttt  CT-rich tract
     ttttttgttatttaa  TA-rich tract