1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagtggtaaatatctcagttttgaattgggggccaccaaacacatgttccagtcctcccaaattccaatccttctgaaagtttgatgttttttccacagCAAAAGCACTAGCAGAGCTTGCAAGGAAGCATTCAGTGGATGTCACCTTTGATTCACCCTACTCAATGGAGGCTCGGAGTCGG
species | Oryza sativa |
transcript | LOC_Os01g07090.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCAAGAGATCGTTTCTGTCATTTCCGAGTCTCCAGGGGTAGATGAAGCTG CAAAAGCACTAGCAGAGCTTGCAAGGAAGCATTCGGTGGATGTCACCTTTGEST: gi|117230125|gb|CT846221.1|CT846221
genomic: TCAAGAGATCGTTTCTGTCATTTCCGAGTCTCCAGGGGTAGATGAAGCTGgtaagtggta ... ttttccacagCAAAAGCACTAGCAGAGCTTGCAAGGAAGCATTCAGTGGATGTCACCTTTG
EST: TCAAGAGATCGTTTCTGTCATTTCCGAGTCTCCAGGGGTAGATGAAGCTG CAAAAGCACTAGCAGAGCTTGCAAGGAAGCATTCGGTGGATGTCACCTTTGEST: gi|29641054|gb|CB646061.1|CB646061
genomic: TCAAGAGATCGTTTCTGTCATTTCCGAGTCTCCAGGGGTAGATGAAGCTGgtaagtggta ... ttttccacagCAAAAGCACTAGCAGAGCTTGCAAGGAAGCATTCAGTGGATGTCACCTTTG
EST: TCAAGAGATCGTTTCTGTCATTTCCGAGTCTCCAGGGGTAGATGAAGCTG CAAAAGCACTAGCAGAGCTTGCAAGGAAGCATTCAGTGGATGTCACCTTTGEST: gi|88844338|gb|CI005711.1|CI005711
genomic: TCAAGAGATCGTTTCTGTCATTTCCGAGTCTCCAGGGGTAGATGAAGCTGgtaagtggta ... ttttccacagCAAAAGCACTAGCAGAGCTTGCAAGGAAGCATTCAGTGGATGTCACCTTTG
EST: TCAAGAGATCGTTTCTGTCATTTCCGAGTCTCCAGGGGTAGATGAAGCTG CAAAAGCACTAGCAGAGCTTGCAAGGAAGCATTCAGTGGATGTCACCTTTGEST: gi|29685959|gb|CB682234.1|CB682234
genomic: TCAAGAGATCGTTTCTGTCATTTCCGAGTCTCCAGGGGTAGATGAAGCTGgtaagtggta ... ttttccacagCAAAAGCACTAGCAGAGCTTGCAAGGAAGCATTCAGTGGATGTCACCTTTG
EST: TCAAGAGATCGTTTCTGTCATTTCCGAGTCTCCAGGGGTAGATGAAGCTG CAAAAGCACTAGCAGAGCTTGCAAGGAAGCATTCAGTGGATGTCACCTTTGEST: gi|29685960|gb|CB682235.1|CB682235
genomic: TCAAGAGATCGTTTCTGTCATTTCCGAGTCTCCAGGGGTAGATGAAGCTGgtaagtggta ... ttttccacagCAAAAGCACTAGCAGAGCTTGCAAGGAAGCATTCAGTGGATGTCACCTTTG
EST: TCAAGAGATCGTTTCTGTCATTTCCGAGTCTCCAGGGGTAGATGAAGCTG CAAAAGCACTAGCAGAGCTTGCAAGGAAGCATTCAGTGGATGTCACCTTTGEST: gi|86259009|gb|CI004553.1|CI004553
genomic: TCAAGAGATCGTTTCTGTCATTTCCGAGTCTCCAGGGGTAGATGAAGCTGgtaagtggta ... ttttccacagCAAAAGCACTAGCAGAGCTTGCAAGGAAGCATTCAGTGGATGTCACCTTTG
EST: TCAAGAGATCGTTTCTGTCATTTCCGAGTCTCCAGGGGTAGATGAAGCTG CAAAAGCACTAGCAGAGCTTGCAAGGAAGCATTCAGTGGATGTCACCTTTGEST: gi|86903280|gb|CI313643.1|CI313643
genomic: TCAAGAGATCGTTTCTGTCATTTCCGAGTCTCCAGGGGTAGATGAAGCTGgtaagtggta ... ttttccacagCAAAAGCACTAGCAGAGCTTGCAAGGAAGCATTCAGTGGATGTCACCTTTG
EST: ATTTCCGAGTCTCCAGGGGTATATTAAGCTC CAAAAGCACTAGCAGAGCTTGCAAGGAACCATTCAGTGGATGTCACCTTTG
genomic: ATTTCCGAGTCTCCAGGGGTAGATGAAGCTGgtaagtggta ... ttttccacagCAAAAGCACTAGCAGAGCTTGCAAGGAAGCATTCAGTGGATGTCACCTTTG
tgttccagtcctcccaaattccaatccttctgaaagtttgatgttttttccacagCAAAAGCACTAGCAGAGCTTGCAAGGAAGCATTCAGTGGATGTCACCTTTGATTCACCCTACTCAATGGAGGCTCGGAGTCGG
gtttgat putative branch site (score: 28)
tgttttttcc CT-rich tract
atgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtggtaaatatctcagttttgaattgggggccaccaaacacatgttccagtcctcccaaattccaatccttctgaaagtttgatgttttttccacagCAAAAGCACTAGCAGAGCTTGCAAGGAAGCATTCAGTGGATGTCACCTTTGATTCACCCTACTCAATGGAGGCTCGGAGTCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG