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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttagctcctgataacttttatcatgtccttgcaattagcaatgtgcacattgctcttgatgctgtctttccatggattatatgatattaagtaatactgaaacttatggtcctccttcggactggatctgaagattctattctccttttcttttccagTTGGAATGATGAACTGCTACCAAGCCGAGAAGAAGCTGAAAGGCTACGTGACGCTCTAGAGAAATGCAGAATCCGTAATTTCAAAGACAACGGTCACAAA

Basic information

species Oryza sativa
transcript LOC_Os09g33530.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29672004|gb|CB668279.1|CB668279
EST:     GTCAATTCCCGTTTGCATGCAGTTAAAGCGCAGACTTTGGTGCTTGCTAG                         TTGGAATGATGAACTGCTACCAAGCCAGAGAAGAAGCTGAAAGGCTACGTG
genomic: GTCAATTCCCGTTTGCATGCAGTTAAAGCGCAGACTTTGGTGCTTGCTAGgtatgtttag ... tcttttccagTTGGAATGATGAACTGCTACCAAGCC-GAGAAGAAGCTGAAAGGCTACGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatggtcctccttcggactggatctgaagattctattctccttttcttttccagTTGGAATGATGAACTGCTACCAAGCCGAGAAGAAGCTGAAAGGCTACGTGACGCTCTAGAGAAATGCAGAATCCGTAATTTCAAAGACAACGGTCACAAA
                               ttctattctccttttc  CT-rich tract
                                          ttttctttt  TA-rich tract