1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aaactttcaacttttctgtcacatcgttccaatttcaaccaaacttctaattttggcgtgaactaaacacacccttaacacaatttgattctcttcgtagGTTTACTCCAGAGCAGATGAACAACTCATGCGTGACTGCCTTCATGCCGACATGGCTACCCTGAACTCCTGAAGGCCGATGCGACAACCAATAAAAACGG
species | Oryza sativa |
transcript | LOC_Os09g32948.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CATTCCCTGGAAGCTGCCGCCGAGCCCACCTTGCAGATCGG GTTTACTCCAGAGCAGATGAACAACTCATGCCTGACTGCCTTCATGCCGACEST: gi|25804402|gb|CA760363.1|CA760363
genomic: CATTCCCTGGAAGCTGCCGCCGAGCCCACCTTGCAGATCGGgtataaaatg ... ctcttcgtagGTTTACTCCAGAGCAGATGAACAACTCATGCGTGACTGCCTTCATGCCGAC
EST: GGATTCTTCCATTCCCTGGAAGCTGCCGCCGAGCCCACCTTGCAGATCGG GTTTACTCCAGAGCAGATGAACAACTCATGCGTGACTGCCTTCATGCCGACEST: gi|66947382|gb|AU312226.1|AU312226
genomic: GGATTCTTCCATTCCCTGGAAGCTGCCGCCGAGCCCACCTTGCAGATCGGgtataaaatg ... ctcttcgtagGTTTACTCCAGAGCAGATGAACAACTCATGCGTGACTGCCTTCATGCCGAC
EST: GGATTCTTCCATTCCCTGGAAGCTGCCGCCGAGCCCACCTTGCAGATCGG GTTTACTCCAGAGCAGATGAACAACTCATGCGTGACTGCCTTCATGCCGACEST: gi|66915572|gb|CX102420.1|CX102420
genomic: GGATTCTTCCATTCCCTGGAAGCTGCCGCCGAGCCCACCTTGCAGATCGGgtataaaatg ... ctcttcgtagGTTTACTCCAGAGCAGATGAACAACTCATGCGTGACTGCCTTCATGCCGAC
EST: GGATTCTTCCATTCCCTGGAAGCTGCCGCCGAGCCCACCTTGCAGATCGG GTTTACTCCAGAGCAGATGAACAACTCATGCGTGACTGCCTTCATGCCGACEST: gi|86866486|gb|CI343436.1|CI343436
genomic: GGATTCTTCCATTCCCTGGAAGCTGCCGCCGAGCCCACCTTGCAGATCGGgtataaaatg ... ctcttcgtagGTTTACTCCAGAGCAGATGAACAACTCATGCGTGACTGCCTTCATGCCGAC
EST: GGATTCTTCCATTCCCTGGAAGCTGCCGCCGAGCCCACCTTGCAGATCGG GTTTACTCCAGAGCAGATGAACAACTCATGCGTGACTGCCTTCATGCCGACEST: gi|58685851|gb|CK074538.1|CK074538
genomic: GGATTCTTCCATTCCCTGGAAGCTGCCGCCGAGCCCACCTTGCAGATCGGgtataaaatg ... ctcttcgtagGTTTACTCCAGAGCAGATGAACAACTCATGCGTGACTGCCTTCATGCCGAC
EST: GGATTCTTCCATTCCCTGGAAGCTGCCGCCGAGCCCACCTTGCAGATCGG GTTTACTCCAGAGCAGATGAACAACTCATGCGTGACTGCCTTCATGCCGACEST: gi|88413209|gb|CI523770.1|CI523770
genomic: GGATTCTTCCATTCCCTGGAAGCTGCCGCCGAGCCCACCTTGCAGATCGGgtataaaatg ... ctcttcgtagGTTTACTCCAGAGCAGATGAACAACTCATGCGTGACTGCCTTCATGCCGAC
EST: CTGGAAGCTGCCGCCGAGCCCACCTTGCAGATCGG GTTTACTCCAGAGCAGATGAACAACTCATGCGTGACTGCCTTCATGCCGAC
genomic: CTGGAAGCTGCCGCCGAGCCCACCTTGCAGATCGGgtataaaatg ... ctcttcgtagGTTTACTCCAGAGCAGATGAACAACTCATGCGTGACTGCCTTCATGCCGAC
tctaattttggcgtgaactaaacacacccttaacacaatttgattctcttcgtagGTTTACTCCAGAGCAGATGAACAACTCATGCGTGACTGCCTTCATGCCGACATGGCTACCCTGAACTCCTGAAGGCCGATGCGACAACCAATAAAAACGG
ttctcttcgt CT-rich tract
aatttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaactttcaacttttctgtcacatcgttccaatttcaaccaaacttctaattttggcgtgaactaaacacacccttaacacaatttgattctcttcgtagGTTTACTCCAGAGCAGATGAACAACTCATGCGTGACTGCCTTCATGCCGACATGGCTACCCTGAACTCCTGAAGGCCGATGCGACAACCAATAAAAACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - -ctgtcac
- - - - - - - - - - - - - - - - - -caaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacaat