1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgcactttccttgaagagtcgagtatttgtggaatattgatttctatattttgagctcttctgcttggttttcagGATACATATGCTAACGCGGAAATCATACTTTTCTCCGCTTTGGAACAATATGAAGGAATCCTCTGCACATCTGTTGGATTGAACAACGTCTGGGGACAAA
species | Oryza sativa |
transcript | LOC_Os09g29470.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAATGCAAGCCTTCTGCCAATTAGCTGGGATAACTTCTGACATAGACAGC GATACATATGCTAACGCGGAAATCATACTTTTCTCCGCTTTGGAACAATATEST: gi|29637840|gb|CB642849.1|CB642849
genomic: CAATGCAAGCCTTCTGCCAATTAGCTGGGATAACTTCTGACATAGACAGCgtatgcactt ... tggttttcagGATACATATGCTAACGCGGAAATCATACTTTTCTCCGCTTTGGAACAATAT
EST: GACATAGACAGC GATACATATGCTAACGCGGAAATCATACTTTTCTCCGCTTTGGAACAATATEST: gi|58689151|gb|CK077838.1|CK077838
genomic: GACATAGACAGCgtatgcactt ... tggttttcagGATACATATGCTAACGCGGAAATCATACTTTTCTCCGCTTTGGAACAATAT
EST: CAATGCAAGCCTTCTGCCAATTAGCTGGGATAACTTCTGACATAGACAGC GATACATATGCTAACGCGGAAATCATACTTTTCTCCGCTTTGGAACAATAT
genomic: CAATGCAAGCCTTCTGCCAATTAGCTGGGATAACTTCTGACATAGACAGCgtatgcactt ... tggttttcagGATACATATGCTAACGCGGAAATCATACTTTTCTCCGCTTTGGAACAATAT
gagtatttgtggaatattgatttctatattttgagctcttctgcttggttttcagGATACATATGCTAACGCGGAAATCATACTTTTCTCCGCTTTGGAACAATATGAAGGAATCCTCTGCACATCTGTTGGATTGAACAACGTCTGGGGACAAA
tattgat putative branch site (score: 3)
ctcttctgctt putative PPT
aatattgatttctata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcactttccttgaagagtcgagtatttgtggaatattgatttctatattttgagctcttctgcttggttttcagGATACATATGCTAACGCGGAAATCATACTTTTCTCCGCTTTGGAACAATATGAAGGAATCCTCTGCACATCTGTTGGATTGAACAACGTCTGGGGACAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA