1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...tatattgggtgccataagcttctttttaatcatgctatgcattttattgatgataacattcaggtattacttgtgctgtaaagaatttcttcttttgcagGATCCTTGTCGCCCAGGAGTGAAGAGTGCTGTACAATTATGCACCAATGCTGGTGTAAAG
species | Oryza sativa |
transcript | LOC_Os08g40530.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGAAGTTACCTGAGGATGACCTGACTCTGCTTTGTATTGTGGGTATAAAG GATCCTTGTCGCCCAGGAGTGAAGAGTGCTGTACAATTATGCACCAATGCTEST: gi|88371699|gb|CI680802.1|CI680802
genomic: GGAAGTTACCTGAGGATGACCTGACTCTGCTTTGTATTGTGGGTATAAAGgtatgtggtg ... tcttttgcagGATCCTTGTCGCCCAGGAGTGAAGAGTGCTGTACAATTATGCACCAATGCT
EST: GGAAGTTACCTGAGGATGACCTGACTCTGCTTTGTATTGTGGGTATAAAG GATCCTTGTCGCCCAGGAGTGAAGAGTGCTGTACAATTATGCACCAATGCTEST: gi|33678328|gb|CF306567.1|CF306567
genomic: GGAAGTTACCTGAGGATGACCTGACTCTGCTTTGTATTGTGGGTATAAAGgtatgtggtg ... tcttttgcagGATCCTTGTCGCCCAGGAGTGAAGAGTGCTGTACAATTATGCACCAATGCT
EST: GGAAGTTACCTGAGGATGACCTGACTCTGCTTTGTATTGTGGGTATAAAG GATCCTTGTCGCCCAGGAGTGAAGAGTGCTGTACAATTATGCACCAATGCTEST: gi|33678453|gb|CF306692.1|CF306692
genomic: GGAAGTTACCTGAGGATGACCTGACTCTGCTTTGTATTGTGGGTATAAAGgtatgtggtg ... tcttttgcagGATCCTTGTCGCCCAGGAGTGAAGAGTGCTGTACAATTATGCACCAATGCT
EST: GGAAGTTACCTGAGGATGACCTGACTCTGCTTTGTATTGTGGGTATAAAG GATCCTTGTCGCCCAGGAGTGAAGAGTGCTGTACAATTATGCACCAATGCTEST: gi|29636809|gb|CB641818.1|CB641818
genomic: GGAAGTTACCTGAGGATGACCTGACTCTGCTTTGTATTGTGGGTATAAAGgtatgtggtg ... tcttttgcagGATCCTTGTCGCCCAGGAGTGAAGAGTGCTGTACAATTATGCACCAATGCT
EST: GGAAGTTACCTGAGGATGACCTGACTCTGCTTTGTATTGTGGGTATAAAG GATCCTTGTCGCCCAGGAGTGAAGAGTGCTGTACAATTATGCACCAATGCTEST: gi|4715537|gb|AU056653.1|AU056653
genomic: GGAAGTTACCTGAGGATGACCTGACTCTGCTTTGTATTGTGGGTATAAAGgtatgtggtg ... tcttttgcagGATCCTTGTCGCCCAGGAGTGAAGAGTGCTGTACAATTATGCACCAATGCT
EST: GGAAGT-ACCTGAGGATGACCTGACTCTGCTTTGTATTGTGGGTATAAAG GATCCTTGTCGCCCAGGAGTGAAGAGTGCTGTACAATTATGCACCAATG
genomic: GGAAGTTACCTGAGGATGACCTGACTCTGCTTTGTATTGTGGGTATAAAGgtatgtggtg ... tcttttgcagGATCCTTGTCGCCCAGGAGTGAAGAGTGCTGTACAATTATGCACCAATG
attgatgataacattcaggtattacttgtgctgtaaagaatttcttcttttgcagGATCCTTGTCGCCCAGGAGTGAAGAGTGCTGTACAATTATGCACCAATGCTGGTGTAAAG
tgataac putative branch site (score: 2)
tttcttcttttgc putative PPT
taaagaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatattgggtgccataagcttctttttaatcatgctatgcattttattgatgataacattcaggtattacttgtgctgtaaagaatttcttcttttgcagGATCCTTGTCGCCCAGGAGTGAAGAGTGCTGTACAATTATGCACCAATGCTGGTGTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG