1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
...cttagaactccacttggtggttcagtcatcctggatcttactactgctgttttgatattcactttaccttttggtgtttatgcctgtatttccttaacagCCAAAGAGTTCGCCCTACAATCCATGATGTTATCACCTCAAAGATAAGAGCCTACTCTGAAGAAACTTCAAAGTCCAATGTAAACAAAGCTGCAAATGAA
species | Oryza sativa |
transcript | LOC_Os08g22864.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAGTGCTTATCCATGCTTGGAAAGGTTGCGGCTGCAGGAGCTGTGATATG CCAAAGAGTTCGCCCTACAATCCATGATGTTATCACCTCAAAGATAAGAGCEST: gi|66919243|gb|CX106091.1|CX106091
genomic: CAGTGCTTATCCATGCTTGGAAAGGTTGCGGCTGCAGGAGCTGTGATATGgtatacttct ... tccttaacagCCAAAGAGTTCGCCCTACAATCCATGATGTTATCACCTCAAAGATAAGAGC
EST: CAGTGCTTATCCATGCTTGGAAAGGTTGCGGCTGCAGGAGCTGTGATATG CCAAAGAGTTCGCCCTACAATCCATGATGTTATCACCTCAAAGATAAGAGCEST: gi|33678502|gb|CF306741.1|CF306741
genomic: CAGTGCTTATCCATGCTTGGAAAGGTTGCGGCTGCAGGAGCTGTGATATGgtatacttct ... tccttaacagCCAAAGAGTTCGCCCTACAATCCATGATGTTATCACCTCAAAGATAAGAGC
EST: CAGTGCTTATCCATGCTTGGAAAGGTTGCGGCTGCAGGAGCTGTGATATG CCAAAGAGTTCGCCCTACAATCCATGATGTTATCACCTCAAAGATAAGAGCEST: gi|58671768|gb|CK060454.1|CK060454
genomic: CAGTGCTTATCCATGCTTGGAAAGGTTGCGGCTGCAGGAGCTGTGATATGgtatacttct ... tccttaacagCCAAAGAGTTCGCCCTACAATCCATGATGTTATCACCTCAAAGATAAGAGC
EST: CAGTGCTTATCCATGCTTGGAAAGGTTGCGGCTGCAGGAGCTGTGATATG CCAAAGAGTTCGCCCTACAATCCATGATGTTATCACCTCAAAGATAAGAGC
genomic: CAGTGCTTATCCATGCTTGGAAAGGTTGCGGCTGCAGGAGCTGTGATATGgtatacttct ... tccttaacagCCAAAGAGTTCGCCCTACAATCCATGATGTTATCACCTCAAAGATAAGAGC
gctgttttgatattcactttaccttttggtgtttatgcctgtatttccttaacagCCAAAGAGTTCGCCCTACAATCCATGATGTTATCACCTCAAAGATAAGAGCCTACTCTGAAGAAACTTCAAAGTCCAATGTAAACAAAGCTGCAAATGAA
ttttgat putative branch site (score: 4)
tatttcctt putative PPT
tttgatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttagaactccacttggtggttcagtcatcctggatcttactactgctgttttgatattcactttaccttttggtgtttatgcctgtatttccttaacagCCAAAGAGTTCGCCCTACAATCCATGATGTTATCACCTCAAAGATAAGAGCCTACTCTGAAGAAACTTCAAAGTCCAATGTAAACAAAGCTGCAAATGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC