1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cattttgcttgctttgtttttgcttgtttttaatcttcaccaggctgaaaaatgcgaaacccttaactgttcttttcatgtgctattactcgtgtttcagTCTCCTGAGGAATGTGCAGTATCAATAACTAACATCATTCGGCATCATGAGTCAGAATATTTGTCATCACTTGAG
species | Oryza sativa |
transcript | LOC_Os07g23200.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATGTGCAGCTGGATACTAACATCGATTGCAAGGATTCCACCATATTGCAG TCTCCTGAGGAATGTGCAGTATNCA-TAACTAACATCATTCGGCATCATGAEST: gi|86528479|gb|CI168685.1|CI168685
genomic: ATGTGCAGCTGGATACTAACATCGATTGCAAGGATTCCACCATATTGCAGgttagttcat ... cgtgtttcagTCTCCTGAGGAATGTGCAGTAT-CAATAACTAACATCATTCGGCATCATGA
EST: GATTCCACCATATTGCAG TCTCCTGAGGAATGTGCAGTATCAATAACTAACATCATTCGGCATCATGAGEST: gi|86494262|gb|CI136895.1|CI136895
genomic: GATTCCACCATATTGCAGgttagttcat ... cgtgtttcagTCTCCTGAGGAATGTGCAGTATCAATAACTAACATCATTCGGCATCATGAG
EST: ATGTGCAGCTGGATACTAACATCGATTGCAAGGATTCCACCATATTGCAG TCTCCTGAGGAATGTGCAGTATCAATAACTAACATCATTCGGCATCATGAGEST: gi|27547453|gb|CA765564.2|CA765564
genomic: ATGTGCAGCTGGATACTAACATCGATTGCAAGGATTCCACCATATTGCAGgttagttcat ... cgtgtttcagTCTCCTGAGGAATGTGCAGTATCAATAACTAACATCATTCGGCATCATGAG
EST: ATGTGCAGCTGGATACTAACATCGATTGCAAGGATTCCACCATATTGCAG TCTCCTGAGGAATGTGCAGTATCAATAACTAACATCATTCGGCATCATGAG
genomic: ATGTGCAGCTGGATACTAACATCGATTGCAAGGATTCCACCATATTGCAGgttagttcat ... cgtgtttcagTCTCCTGAGGAATGTGCAGTATCAATAACTAACATCATTCGGCATCATGAG
tgaaaaatgcgaaacccttaactgttcttttcatgtgctattactcgtgtttcagTCTCCTGAGGAATGTGCAGTATCAATAACTAACATCATTCGGCATCATGAGTCAGAATATTTGTCATCACTTGAG
ccttaac putative branch site (score: 11)
ttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattttgcttgctttgtttttgcttgtttttaatcttcaccaggctgaaaaatgcgaaacccttaactgttcttttcatgtgctattactcgtgtttcagTCTCCTGAGGAATGTGCAGTATCAATAACTAACATCATTCGGCATCATGAGTCAGAATATTTGTCATCACTTGAG
- - ttgcttg
- - -tgcttgc
- - - - - - - - - - - - - - - - - cttcacc
- - - - - - - - - - - - - - - - - - - - - - - gaaaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctatt