1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tcatcatttatgaaaacaagtgcttataatttttttctagtttttttgtacatgtttctgcaagactgatttttgtatgatttgccttcaatgattacagCCAGCAGACGGACGCAACTGTATTGCAGATGAGCATTACTTACCAACCTTATTCAAC
species | Oryza sativa |
transcript | LOC_Os06g45110.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGATTCTGGCAGACAGCCTTTACTACAAAAAGTTCAAGTTGTACTGCAAG CCAGCAGACGGACGCAACTGTATTGCAGATGAGCATTACTTACCAACCTTAEST: gi|29638779|gb|CB643788.1|CB643788
genomic: TGATTCTGGCAGACAGCCTTTACTACAAAAAGTTCAAGTTGTACTGCAAGgtttgctgcc ... atgattacagCCAGCAGACGGACGCAACTGTATTGCAGATGAGCATTACTTACCAACCTTA
EST: TGATTCTGGCAGACAGCCTTTACTACAAAAAGTTCAAGTTGTACTGCAAG CCAGCAGACGGACGCAACTGTATTGCAGATGAGCATTACTTACCAACCTTA
genomic: TGATTCTGGCAGACAGCCTTTACTACAAAAAGTTCAAGTTGTACTGCAAGgtttgctgcc ... atgattacagCCAGCAGACGGACGCAACTGTATTGCAGATGAGCATTACTTACCAACCTTA
ttgtacatgtttctgcaagactgatttttgtatgatttgccttcaatgattacagCCAGCAGACGGACGCAACTGTATTGCAGATGAGCATTACTTACCAACCTTATTCAAC
gactgat putative branch site (score: 3)
atttttgtatgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatcatttatgaaaacaagtgcttataatttttttctagtttttttgtacatgtttctgcaagactgatttttgtatgatttgccttcaatgattacagCCAGCAGACGGACGCAACTGTATTGCAGATGAGCATTACTTACCAACCTTATTCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - caagtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - tttctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgccttc