1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...attttgtacctattaaatgctctttcagaatgtcttgttttgtcaagctgcaactggctatagctttgcaaaaaaaatgacaacatttaatctttcgcagCTACCAGTCAACTCTAAAACAGCTCTTCCAGGAGTTCAAAGGGGAAGATGGAACAGGTTCTGAGTTGGCCACTGTAACCATGAGTATCATGCAGGCTTTA
species | Oryza sativa |
transcript | LOC_Os04g58880.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTGCATCCTTTGACGAGCTACGTGATTAACTATGTCAAATTTTTATTTGA CTACCAGTCAACTCTAAAACAGCTCTTCCAGGAGTTCAAAAGGGAAGATGGEST: gi|29677753|gb|CB674028.1|CB674028
genomic: GTGCATCCTTTGACGAGCTACGTGATTAACTATGTCAAATTTTTATTTGAgtaagtatat ... tctttcgcagCTACCAGTCAACTCTAAAACAGCTCTTCCAGGAGTTCAAAGGGGAAGATGG
EST: GTGCATCCTTTGACGAGCTACGTGATTAACTATGTCAAATTTTTATTTGA CTACCAGTCAACTCTAAAACAGCTCTTCCAGGAGTTCAAAAGGGAAGATGGEST: gi|29665182|gb|CB661457.1|CB661457
genomic: GTGCATCCTTTGACGAGCTACGTGATTAACTATGTCAAATTTTTATTTGAgtaagtatat ... tctttcgcagCTACCAGTCAACTCTAAAACAGCTCTTCCAGGAGTTCAAAGGGGAAGATGG
EST: GTGCATCCTTTGACGAGCTACGTGATTAACTATGTCAAATTTTTATTTGA CTACCAGTCAACTCTAAAACAGCTCTTCCAGGAGTTCAAAAGGGAAGATGG
genomic: GTGCATCCTTTGACGAGCTACGTGATTAACTATGTCAAATTTTTATTTGAgtaagtatat ... tctttcgcagCTACCAGTCAACTCTAAAACAGCTCTTCCAGGAGTTCAAAGGGGAAGATGG
agctgcaactggctatagctttgcaaaaaaaatgacaacatttaatctttcgcagCTACCAGTCAACTCTAAAACAGCTCTTCCAGGAGTTCAAAGGGGAAGATGGAACAGGTTCTGAGTTGGCCACTGTAACCATGAGTATCATGCAGGCTTTA
atttaat putative branch site (score: 44)
tctttcgc CT-rich tract
aaaaaaaatgacaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttgtacctattaaatgctctttcagaatgtcttgttttgtcaagctgcaactggctatagctttgcaaaaaaaatgacaacatttaatctttcgcagCTACCAGTCAACTCTAAAACAGCTCTTCCAGGAGTTCAAAGGGGAAGATGGAACAGGTTCTGAGTTGGCCACTGTAACCATGAGTATCATGCAGGCTTTA
- - - - - - - -aatgctc
- - - - - - - - - - - - - - - tgtcttg
- - - - - - - - - - - - - - - - - - - - - - -agctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacaaca