1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gcaagaataccatggcacatcaatcttccgctgaaattcactcttcagcgatcttatatgcttacctacttttaaatttaaatgttcttatatccgcagGATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGGGGCTTTCATCTCAAACATAAAAGGCGTAATTGTAGAGCCATCAGCAACT
species | Oryza sativa |
transcript | LOC_Os03g26080.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGCACGACAGTCTTGGTGTACCACTGGATGACAAGAG GATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGGEST: gi|86828552|gb|CI278646.1|CI278646
genomic: TGCACGACAGTCTTGGTGTACCACTGGATGACAAGAGgcaagaatac ... atatccgcagGATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGG
EST: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAG GATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGGEST: gi|87015611|gb|CI277569.1|CI277569
genomic: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAGgcaagaatac ... atatccgcagGATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGG
EST: ATTGTAGCTATACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAG GATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGACCTGGGEST: gi|86500370|gb|CI143003.1|CI143003
genomic: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAGgcaagaatac ... atatccgcagGATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGG
EST: TTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACCAAGAG GATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGEST: gi|87015604|gb|CI277562.1|CI277562
genomic: TTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGA-CAAGAGgcaagaatac ... atatccgcagGATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGG
EST: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAG GATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCCTGGEST: gi|86505453|gb|CI148086.1|CI148086
genomic: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAGgcaagaatac ... atatccgcagGATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGG-CCCTGG
EST: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAG GATTGAGTATTCAAATCAGGTTGGAGACACCTCAAGTTGAATGGGCCCTGGEST: gi|86500357|gb|CI142990.1|CI142990
genomic: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAGgcaagaatac ... atatccgcagGATTGAGTATTCAAATCAGGTTGGAGACA-CTCAAGTTGAATGGGCCCTGG
EST: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAG GATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGGEST: gi|87015937|gb|CI279689.1|CI279689
genomic: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAGgcaagaatac ... atatccgcagGATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGG
EST: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAG GATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCCTGGEST: gi|88959341|gb|CI093036.1|CI093036
genomic: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAGgcaagaatac ... atatccgcagGATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGG-CCCTGG
EST: ATTGTAGCTTTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAG GATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGGEST: gi|86501302|gb|CI143935.1|CI143935
genomic: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAGgcaagaatac ... atatccgcagGATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGG
EST: TTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACCAAGAG GATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGEST: gi|86498791|gb|CI141424.1|CI141424
genomic: TTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGA-CAAGAGgcaagaatac ... atatccgcagGATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGG
EST: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAG GATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGGEST: gi|87021649|gb|CI276048.1|CI276048
genomic: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAGgcaagaatac ... atatccgcagGATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGG
EST: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAG GATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGGEST: gi|88225174|gb|CI225090.1|CI225090
genomic: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAGgcaagaatac ... atatccgcagGATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGG
EST: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAG GATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGGEST: gi|87026199|gb|CI278323.1|CI278323
genomic: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAGgcaagaatac ... atatccgcagGATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGG
EST: ATTGTAGCTCTACTGCTCGACAGTCTTGGTGTACCACTGGATGACAAGAG GATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGGEST: gi|86499306|gb|CI141939.1|CI141939
genomic: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAGgcaagaatac ... atatccgcagGATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGG
EST: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAG GATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGGEST: gi|88225813|gb|CI225729.1|CI225729
genomic: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAGgcaagaatac ... atatccgcagGATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGG
EST: TTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAG GATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGGEST: gi|86502869|gb|CI145502.1|CI145502
genomic: TTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAGgcaagaatac ... atatccgcagGATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGG
EST: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAG GATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGGEST: gi|88959280|gb|CI092975.1|CI092975
genomic: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAGgcaagaatac ... atatccgcagGATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGG
EST: TGCACGACAGTCTTGGTGTACCACTGGATGACAAGAG GATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGGEST: gi|86501742|gb|CI144375.1|CI144375
genomic: TGCACGACAGTCTTGGTGTACCACTGGATGACAAGAGgcaagaatac ... atatccgcagGATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGG
EST: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAG GATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGGEST: gi|86498361|gb|CI140994.1|CI140994
genomic: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAGgcaagaatac ... atatccgcagGATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGG
EST: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAG GATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGGEST: gi|89181030|gb|CI045113.1|CI045113
genomic: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAGgcaagaatac ... atatccgcagGATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGG
EST: CGACAGTCTTGGTGTACCACTGGATGACAAGAG GATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGGEST: gi|86502691|gb|CI145324.1|CI145324
genomic: CGACAGTCTTGGTGTACCACTGGATGACAAGAGgcaagaatac ... atatccgcagGATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGG
EST: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAG GATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGGEST: gi|86593841|gb|CI260070.1|CI260070
genomic: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAGgcaagaatac ... atatccgcagGATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGG
EST: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAG GATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGGEST: gi|29685912|gb|CB682187.1|CB682187
genomic: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAGgcaagaatac ... atatccgcagGATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGG
EST: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAG GATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGGEST: gi|88221597|gb|CI221553.1|CI221553
genomic: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAGgcaagaatac ... atatccgcagGATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGG
EST: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAG GATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGGEST: gi|86500132|gb|CI142765.1|CI142765
genomic: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAGgcaagaatac ... atatccgcagGATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGG
EST: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAG GATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGGEST: gi|88225802|gb|CI225718.1|CI225718
genomic: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAGgcaagaatac ... atatccgcagGATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGG
EST: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAG GATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGGEST: gi|86859213|gb|CI277100.1|CI277100
genomic: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAGgcaagaatac ... atatccgcagGATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGG
EST: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAG GATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGGEST: gi|88222432|gb|CI222388.1|CI222388
genomic: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAGgcaagaatac ... atatccgcagGATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGG
EST: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAG GATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGG
genomic: ATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAGgcaagaatac ... atatccgcagGATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGG
tcagcgatcttatatgcttacctacttttaaatttaaatgttcttatatccgcagGATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGGGGCTTTCATCTCAAACATAAAAGGCGTAATTGTAGAGCCATCAGCAACT
tgcttac putative branch site (score: 13)
ttcttat putative PPT
tacttttaaatttaaa TA-rich tract