1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatgatgtttatgacctatatcagttattatagctctatgggtatcttggatgtttttatgactatcttagggtttgtcttagctcaatatgttgttcgttgtggtgaacttttgtttttatttgccttatgttatatttctacagTTGAAAGAAAAGATGCTGGAACTTGAGCTCGCCGATCTGAAAATGCAACAACATCAAGAGAAAACAGCTCAGGAACAAACCCAGATGCAGCTATATGCTG
species | Oryza sativa |
transcript | LOC_Os03g17930.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAGACCTTGCAGATCAATATAATATCACACAGCAGAAATATGCTCATCAG TTGAAAGAAAAGATGCTGGAACTTGAGCTCGCCGATCTGAAAATGGCA-CAEST: gi|40490411|gb|BX899913.1|BX899913
genomic: AAGACCTTGCAGATCAATATAATATCACACAGCAGAAATATGCTCATCAGgtatgatgtt ... atttctacagTTGAAAGAAAAGATGCTGGAACTTGAGCTCGCCGATCTGAAAATG-CAACA
EST: AAGACCTTGCAGATCAATATAATATCACACAGCAGAAATATGCTCATCAG TTGAAAGAAAAGATGCTGGAACTTGAGCTCGCCGATCTGAAAATGCAACAAEST: gi|38479504|gb|CF963613.1|CF963613
genomic: AAGACCTTGCAGATCAATATAATATCACACAGCAGAAATATGCTCATCAGgtatgatgtt ... atttctacagTTGAAAGAAAAGATGCTGGAACTTGAGCTCGCCGATCTGAAAATGCAACAA
EST: AAGACCTTGCAGATCAATATAATATCACACAGCAGAAATATGCTCATCAG TTGAAAGAAAAGATGCTGGAACTTGAGCTCGCCGATCTGAAAATGCAACAAEST: gi|2431215|gb|C73635.1|C73635
genomic: AAGACCTTGCAGATCAATATAATATCACACAGCAGAAATATGCTCATCAGgtatgatgtt ... atttctacagTTGAAAGAAAAGATGCTGGAACTTGAGCTCGCCGATCTGAAAATGCAACAA
EST: AAGACCTTGCAGATCAATATAATATCACACAGCAGAAATATGCTCATCAG TTGAAAGAAAAGATGCTGGAACTTGAGCTCGCCGATCTGAAAATGCAACAAEST: gi|29639434|gb|CB644443.1|CB644443
genomic: AAGACCTTGCAGATCAATATAATATCACACAGCAGAAATATGCTCATCAGgtatgatgtt ... atttctacagTTGAAAGAAAAGATGCTGGAACTTGAGCTCGCCGATCTGAAAATGCAACAA
EST: AAGACCTTGCAGATCAATATAATATCACACAGCAGAAATATGCTCATCAG TTGAAAGAAAAGATGCTGGAACTTGAGCTCGCCGATCTGAAAATGCAACAA
genomic: AAGACCTTGCAGATCAATATAATATCACACAGCAGAAATATGCTCATCAGgtatgatgtt ... atttctacagTTGAAAGAAAAGATGCTGGAACTTGAGCTCGCCGATCTGAAAATGCAACAA
gttgttcgttgtggtgaacttttgtttttatttgccttatgttatatttctacagTTGAAAGAAAAGATGCTGGAACTTGAGCTCGCCGATCTGAAAATGCAACAACATCAAGAGAAAACAGCTCAGGAACAAACCCAGATGCAGCTATATGCTG
tatttct CT-rich tract
aacttttgtttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatgtttatgacctatatcagttattatagctctatgggtatcttggatgtttttatgactatcttagggtttgtcttagctcaatatgttgttcgttgtggtgaacttttgtttttatttgccttatgttatatttctacagTTGAAAGAAAAGATGCTGGAACTTGAGCTCGCCGATCTGAAAATGCAACAACATCAAGAGAAAACAGCTCAGGAACAAACCCAGATGCAGCTATATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG