1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttagtccattgagttcatgaatctttggactaatggatgttccttcattgaagatgttattgatctgtcaccgacattatcgcagATTGCTGACAGACGGGATCAGGAGCGGAAAGCATTTTCTAGGATGTTCCAACCATCAGGAGGTTCAGAGAAGATCGATGAA
species | Oryza sativa |
transcript | LOC_Os02g52360.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAGGAATTAAGCGGGAGCTGGCTGCTGCAAAAAAGAAG ATTGCTGACAGACGGGATCAGGAGCGGAAAGCATTTTCTAGGATGTTCCAAEST: gi|86500986|gb|CI143619.1|CI143619
genomic: GAGGAATTAAGCGGGAGCTGGCTGCTGCAAAAAAGAAGgttagtccat ... attatcgcagATTGCTGACAGACGGGATCAGGAGCGGAAAGCATTTTCTAGGATGTTCCAA
EST: GAGGAATTAAGCGGGAGCTGGCTGCTGCAAAAAAGAAG ATTGCTGACAGACGGGATCAGGAGCGGAAAGCATTTTCTAGGATGTTCCAAEST: gi|58652761|gb|CK041441.1|CK041441
genomic: GAGGAATTAAGCGGGAGCTGGCTGCTGCAAAAAAGAAGgttagtccat ... attatcgcagATTGCTGACAGACGGGATCAGGAGCGGAAAGCATTTTCTAGGATGTTCCAA
EST: GAGGAATTAAGCGGGAGCTGGCTGCTGCAAAAAAGAAG ATTGCTGACAGACGGGATCAGGAGCGGAAAGCATTTTCTAGGATGTTCCAA
genomic: GAGGAATTAAGCGGGAGCTGGCTGCTGCAAAAAAGAAGgttagtccat ... attatcgcagATTGCTGACAGACGGGATCAGGAGCGGAAAGCATTTTCTAGGATGTTCCAA
taatggatgttccttcattgaagatgttattgatctgtcaccgacattatcgcagATTGCTGACAGACGGGATCAGGAGCGGAAAGCATTTTCTAGGATGTTCCAACCATCAGGAGGTTCAGAGAAGATCGATGAA
atgttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtccattgagttcatgaatctttggactaatggatgttccttcattgaagatgttattgatctgtcaccgacattatcgcagATTGCTGACAGACGGGATCAGGAGCGGAAAGCATTTTCTAGGATGTTCCAACCATCAGGAGGTTCAGAGAAGATCGATGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG