1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atcttgttttttatcatatacaagttttcattttattgacctgagttctatttctgtaattttgattattatgataatcttcgctatgaaatttctgcagGTTGCCCTTATCATGGTCATCAGATGTACCTGGAATCATGATGTTGCCCCGATGGATGGGACAATGATCCAAGAGCAACGGTTGCTCTTGTCAGTTTTGC
species | Oryza sativa |
transcript | LOC_Os02g48340.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTTGTAGTACTGGTTCTTACCTGGCAAGTAATCCCCCTTGCATTCATAAG GTTGTCCTTATCATGGTCATCAGATGTACCTGGAATCATGATGTTGCCCCGEST: gi|29645024|gb|CB650031.1|CB650031
genomic: TTTGTAGTACTGGTTCTTACCTGGCAAGTAATCCCCCTTGCATTCATAAGgtaccaatta ... atttctgcagGTTGCCCTTATCATGGTCATCAGATGTACCTGGAATCATGATGTTGCCCCG
EST: TTTGTAGTACTGGTTCTTACCTGGCAAGTAATCCCCCTTGCATTCATAAG GTTGCCCTTATCATGGTCATCAGATGTACCTGGAATCATGATGTTGCCCCGEST: gi|33676574|gb|CF304813.1|CF304813
genomic: TTTGTAGTACTGGTTCTTACCTGGCAAGTAATCCCCCTTGCATTCATAAGgtaccaatta ... atttctgcagGTTGCCCTTATCATGGTCATCAGATGTACCTGGAATCATGATGTTGCCCCG
EST: TTTGTAGTACTGGTTCCTACCTGGCAAGTAATCCCCCTTGCATTCATAAG GTTGCCCTTATCATGGTCATCEST: gi|58674908|gb|CK063595.1|CK063595
genomic: TTTGTAGTACTGGTTCTTACCTGGCAAGTAATCCCCCTTGCATTCATAAGgtaccaatta ... atttctgcagGTTGCCCTTATCATGGTCATC
EST: TTTGTAGTACTGGTTCTTACCTGGCAAGTAATCCCCCTTGCATTCATAAG GTTGTCCTTATCATGGTCATCAGATGTACCTGGAATCATGATGTTGCCCCGEST: gi|58676595|gb|CK065282.1|CK065282
genomic: TTTGTAGTACTGGTTCTTACCTGGCAAGTAATCCCCCTTGCATTCATAAGgtaccaatta ... atttctgcagGTTGCCCTTATCATGGTCATCAGATGTACCTGGAATCATGATGTTGCCCCG
EST: TTTGTAGTACTGGTTCTTACCTGGCAAGTAATCCCCCTTGCATTCATAAG GTTGTCCTTATCATGGTCATCAGATGTACCTGGAATCATGATGTTGCCCCGEST: gi|38479722|gb|CF963811.1|CF963811
genomic: TTTGTAGTACTGGTTCTTACCTGGCAAGTAATCCCCCTTGCATTCATAAGgtaccaatta ... atttctgcagGTTGCCCTTATCATGGTCATCAGATGTACCTGGAATCATGATGTTGCCCCG
EST: TTTGTAGTACTGGTTCTTACCTGGCAAGTAATCCCCCTTGCATTCATAAG GTTGTCCTTATCATGGTCATCAGATGTACCTGGAATCATGATGTTGCCCCGEST: gi|29677295|gb|CB673570.1|CB673570
genomic: TTTGTAGTACTGGTTCTTACCTGGCAAGTAATCCCCCTTGCATTCATAAGgtaccaatta ... atttctgcagGTTGCCCTTATCATGGTCATCAGATGTACCTGGAATCATGATGTTGCCCCG
EST: TTTGGAGTACTGGTTCTTACCTGGCAAGTAATCCCCCTTGCATTCATAAG GTTGCCCTTATCATGGTCATCAGATGTACCTGGAATCATGATGTTGCCCCG
genomic: TTTGTAGTACTGGTTCTTACCTGGCAAGTAATCCCCCTTGCATTCATAAGgtaccaatta ... atttctgcagGTTGCCCTTATCATGGTCATCAGATGTACCTGGAATCATGATGTTGCCCCG
ttctatttctgtaattttgattattatgataatcttcgctatgaaatttctgcagGTTGCCCTTATCATGGTCATCAGATGTACCTGGAATCATGATGTTGCCCCGATGGATGGGACAATGATCCAAGAGCAACGGTTGCTCTTGTCAGTTTTGC
ttttgat putative branch site (score: 18)
tttctgc putative PPT
tttctgtaattttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcttgttttttatcatatacaagttttcattttattgacctgagttctatttctgtaattttgattattatgataatcttcgctatgaaatttctgcagGTTGCCCTTATCATGGTCATCAGATGTACCTGGAATCATGATGTTGCCCCGATGGATGGGACAATGATCCAAGAGCAACGGTTGCTCTTGTCAGTTTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA