1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tatcattgtgtggtgactttgatgtggtttacctttttttacttggtcactgagtattatatacatgcatcaaattctaattgtttttaacttcacacagGCTTCTCCTGTAATGATTGGTGGACGCCAATGTTTTGTCGAGGAGAAGAGAACACCTGGTTCACGAG
species | Oryza sativa |
transcript | LOC_Os02g29480.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATGGCTTTGTTGAATTCGAGGAAGCTACTGCAGTCCAAAGTGCTATAGAG GCTTCTCCTGTAATGATTGGTGGACGCCAATGTTTTGTCGAGGAGAAGAGEST: gi|702077|gb|D48368.1|D48368
genomic: ATGGCTTTGTTGAATTCGAGGAAGCTACTGCAGTCCAAAGTGCTATAGAGgtagtctttc ... cttcacacagGCTTCTCCTGTAATGATTGGTGGACGCCAATGTTTTGTCGAGGAGAAGAG
EST: ATGGCTTTGTTGAATTCGAGGAAGCTACTGCAGTCCAAAGTGCTATAGAG GCTTCTCCTGTAATGATTGGTGGACGCCAATGTTTTGTCGAGGAGAAGAGAEST: gi|33794831|gb|CF323295.1|CF323295
genomic: ATGGCTTTGTTGAATTCGAGGAAGCTACTGCAGTCCAAAGTGCTATAGAGgtagtctttc ... cttcacacagGCTTCTCCTGTAATGATTGGTGGACGCCAATGTTTTGTCGAGGAGAAGAGA
EST: ATGGCTTTGTTGAATTCGAGGAAGCTACTGCAGTCCAAAGTGCTATAGAG GCTTCTCCTGTAATGATTGGTGGACGCCAATGTTTTGTCGAGGAGAAGAGAEST: gi|218484950|gb|FG946473.1|FG946473
genomic: ATGGCTTTGTTGAATTCGAGGAAGCTACTGCAGTCCAAAGTGCTATAGAGgtagtctttc ... cttcacacagGCTTCTCCTGTAATGATTGGTGGACGCCAATGTTTTGTCGAGGAGAAGAGA
EST: ATGGCTTTGTTGAATTCGAGGAAGCTACTGCAGTCCAAAGTGCTATAGAG GCTTCTCCTGTAATGATTGGTGGACGCCAATGTTTTGTCGAGGAGAAGAGAEST: gi|88828818|gb|CI073688.1|CI073688
genomic: ATGGCTTTGTTGAATTCGAGGAAGCTACTGCAGTCCAAAGTGCTATAGAGgtagtctttc ... cttcacacagGCTTCTCCTGTAATGATTGGTGGACGCCAATGTTTTGTCGAGGAGAAGAGA
EST: AGTCCAAAGTGCTATAGAG GCTTCTCCTGTAATGATTGGTGGACGCCAATGTTTTGTCGAGGAGAAGAGA
genomic: AGTCCAAAGTGCTATAGAGgtagtctttc ... cttcacacagGCTTCTCCTGTAATGATTGGTGGACGCCAATGTTTTGTCGAGGAGAAGAGA
gtcactgagtattatatacatgcatcaaattctaattgtttttaacttcacacagGCTTCTCCTGTAATGATTGGTGGACGCCAATGTTTTGTCGAGGAGAAGAGAACACCTGGTTCACGAG
ttttaac putative branch site (score: 6)
atcaaattctaattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatcattgtgtggtgactttgatgtggtttacctttttttacttggtcactgagtattatatacatgcatcaaattctaattgtttttaacttcacacagGCTTCTCCTGTAATGATTGGTGGACGCCAATGTTTTGTCGAGGAGAAGAGAACACCTGGTTCACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - tgtggtg
- - - - - - - - - ttgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacatgc