1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...aattgattattgaaattatatggtaatgaatggagctacaatgctaaatatgataagattttactgaaatgagtcttccaccctcctgttttgtgtgtagGAACATGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGTGCAG
species | Oryza sativa |
transcript | LOC_Os01g71770.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCATTTTGAAGCCTATGGAGAAATCACTGATCTTTACATGCCAAAG GAACATGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGTEST: gi|58598133|gb|CK008661.1|CK008661
genomic: GCATTTTGAAGCCTATGGAGAAATCACTGATCTTTACATGCCAAAGgtgagcaaat ... ttgtgtgtagGAACATGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGT
EST: GCATTTTGAAGCCTATGGAGAAATCACTGATCTTTACATGCCAAAG GAACATGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGTEST: gi|32947891|gb|BP184463.1|BP184463
genomic: GCATTTTGAAGCCTATGGAGAAATCACTGATCTTTACATGCCAAAGgtgagcaaat ... ttgtgtgtagGAACATGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGT
EST: GCATTTTGAAGCCTATGGAGAAATCACTGATCTTTACATGCCAAAG GAACATGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGTEST: gi|58603513|gb|CK014041.1|CK014041
genomic: GCATTTTGAAGCCTATGGAGAAATCACTGATCTTTACATGCCAAAGgtgagcaaat ... ttgtgtgtagGAACATGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGT
EST: GCATTTTGAAGCCTATGGAGAAATCACTGATCTTTACATGCCAAAG GAACATGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGTEST: gi|58672481|gb|CK061167.1|CK061167
genomic: GCATTTTGAAGCCTATGGAGAAATCACTGATCTTTACATGCCAAAGgtgagcaaat ... ttgtgtgtagGAACATGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGT
EST: CTGATCTTTACATGCCAAAG GAACATGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGTEST: gi|29677102|gb|CB673377.1|CB673377
genomic: CTGATCTTTACATGCCAAAGgtgagcaaat ... ttgtgtgtagGAACATGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGT
EST: GCATTTTGAAGCCTATGGAGAAATCACTGATCTTTACATGCCAAAG GAACATGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGTEST: gi|116875665|gb|EC366173.1|EC366173
genomic: GCATTTTGAAGCCTATGGAGAAATCACTGATCTTTACATGCCAAAGgtgagcaaat ... ttgtgtgtagGAACATGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGT
EST: GCATTTTGAAGCCTATGGAGAAATCACTGATCTTTACATGCCAAAG GAACATGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGTEST: gi|116875549|gb|EC366057.1|EC366057
genomic: GCATTTTGAAGCCTATGGAGAAATCACTGATCTTTACATGCCAAAGgtgagcaaat ... ttgtgtgtagGAACATGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGT
EST: GCATTTTGAAGCCTATGGAGAAATCACTGATCTTTACATGCCAAAG GAACATGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGTEST: gi|33684319|gb|CF312558.1|CF312558
genomic: GCATTTTGAAGCCTATGGAGAAATCACTGATCTTTACATGCCAAAGgtgagcaaat ... ttgtgtgtagGAACATGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGT
EST: GCATTTTGAAGCCTATGGAGAAATCACTGATCTTTACATGCCAAAG GAACATGGTTCAAAGGGTCATCGTGGAAATTGGGTTCATCACTTTTC
genomic: GCATTTTGAAGCCTATGGAGAAATCACTGATCTTTACATGCCAAAGgtgagcaaat ... ttgtgtgtagGAACATGGTTCAAAGGGTCATCGTGGAA-TTGGGTTCATCACTTTTC
aaatatgataagattttactgaaatgagtcttccaccctcctgttttgtgtgtagGAACATGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGTGCAG
tgctaaa putative branch site (score: 33)
tcttccaccctcctgt putative PPT
ataagatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattgattattgaaattatatggtaatgaatggagctacaatgctaaatatgataagattttactgaaatgagtcttccaccctcctgttttgtgtgtagGAACATGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGTGCAG
- - - - - - - - - - - - -atgaatg
- - - - - - - - - - - - - - - - -agctaca
- - - - - - - - - - - - - - - - - - - - atgctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttactga