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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttaattcgtaccactgctgattaattttcatgcttgattctcagttcagaataaccagaattatgctttatttttatgacagTCGCTGGGAAGCCAGGTGGCATTCCAAGCAATGGTGTCCATCGCGACGATAGGGCTCTGCATCTCCTACGCGCTGCCGATCTTCTTCCGGGTGACGACGG

Basic information

species Oryza sativa
transcript LOC_Os01g71720.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88901663|gb|CI001771.1|CI001771
EST:     CATGGCTCTGACA                         TCGCTGGGAAGNCAGGTGGCATTCCAAGCAATGGTGTCCATCGCGACGATA
genomic: CATGGCTCTGACAgtgagttaat ... tttatgacagTCGCTGGGAAGCCAGGTGGCATTCCAAGCAATGGTGTCCATCGCGACGATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatgcttgattctcagttcagaataaccagaattatgctttatttttatgacagTCGCTGGGAAGCCAGGTGGCATTCCAAGCAATGGTGTCCATCGCGACGATAGGGCTCTGCATCTCCTACGCGCTGCCGATCTTCTTCCGGGTGACGACGG
                     gaataac  putative branch site (score: 2)
                                      ctttattttt  putative PPT
                             agaattatgctttatt  TA-rich tract