1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtattttcctacattaaacaacgccttttccccattaaataaattggctctgtgggtcttaagcactctgcattttatgaacaaagtgtacttattggtttgatctttttataagctggaaagggctactaggatgggcagtttgctgctatctgttccttaatactgtactaatgtcttcccactatttatcagGAAGTTCAATCCCGATACAAGAAAGCTGATGACCTCTGCCAGAAGCTTGGAATACATGTAGAAAGGCAGGAACAACCGAACCATGGGCCTAAGAACTCAG
species | Oryza sativa |
transcript | LOC_Os01g70060.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAGTTCAAAATGGAACGGGCCAGAAGCCAGATTAAG GAAGTTCAATCCCGATACAAGAAAGCTGATGACCTCTGCCAGAAGCTTGGAEST: gi|2312754|gb|C28909.1|C28909
genomic: GAGTTCAAAATGGAACGGGCCAGAAGCCAGATTAAGgtattttcct ... tatttatcagGAAGTTCAATCCCGATACAAGAAAGCTGATGACCTCTGCCAGAAGCTTGGA
EST: GAGTTCAAAATGGAACGGGCCAGAAGCCAGATTAAG GAAGTTCAATCCCGATACAAGAAAGCTGATGACCTCTGCCAGAAGCTTGGAEST: gi|58665494|gb|CK054180.1|CK054180
genomic: GAGTTCAAAATGGAACGGGCCAGAAGCCAGATTAAGgtattttcct ... tatttatcagGAAGTTCAATCCCGATACAAGAAAGCTGATGACCTCTGCCAGAAGCTTGGA
EST: GAGTTCAAAATGGAACGGGCCAGAAGCCAGATTAAG GAAGTTCAATCCCGATACAAGAAAGCTGATGACCTCTGCCAGAAGCTTGGAEST: gi|58676840|gb|CK065527.1|CK065527
genomic: GAGTTCAAAATGGAACGGGCCAGAAGCCAGATTAAGgtattttcct ... tatttatcagGAAGTTCAATCCCGATACAAGAAAGCTGATGACCTCTGCCAGAAGCTTGGA
EST: GCCAGATTAAG GAAGTTCAATCCCGATACAAGAAAGCTGATGACCTCTGCCAGAAGCTTGTG
genomic: GCCAGATTAAGgtattttcct ... tatttatcagGAAGTTCAATCCCGATACAAGAAAGCTGATGACCTCTGCCAGAAGCTTG-G
gtttgctgctatctgttccttaatactgtactaatgtcttcccactatttatcagGAAGTTCAATCCCGATACAAGAAAGCTGATGACCTCTGCCAGAAGCTTGGAATACATGTAGAAAGGCAGGAACAACCGAACCATGGGCCTAAGAACTCAG
tactaat putative branch site (score: 8)
tcttcccactattt CT-rich tract
actatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattttcctacattaaacaacgccttttccccattaaataaattggctctgtgggtcttaagcactctgcattttatgaacaaagtgtacttattggtttgatctttttataagctggaaagggctactaggatgggcagtttgctgctatctgttccttaatactgtactaatgtcttcccactatttatcagGAAGTTCAATCCCGATACAAGAAAGCTGATGACCTCTGCCAGAAGCTTGGAATACATGTAGAAAGGCAGGAACAACCGAACCATGGGCCTAAGAACTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC