1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgagatatcatttcctttggaatgtgattgtgagttgtctacacaatttgctactgtgattcttttcttatatttatcacgcaaatgatttcagGACCTGTCGACAGGGTGGCTTCGTTGTGACCCTGGTCCTATGTTTAAGCCAGAACATTATTCTTTGGGAGAATGGGTGCCAAAGGGG
species | Oryza sativa |
transcript | LOC_Os01g55360.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTAGCAAATGTAATGGGCCGTTTCCAATGGTTGACATGCCCAAGAAAA GACCTGTCGACAGGGTGGCTTCGTTGTGACCCTGGTCCTATGTTTAAGCCAEST: gi|29679198|gb|CB675473.1|CB675473
genomic: TTAGCAAATGTAATGGGCCGTTTCCAATGGTTGACATGCCCAAGAAAAgtgagatatc ... atgatttcagGACCTGTCGACAGGGTGGCTTCGTTGTGACCCTGGTCCTATGTTTAAGCCA
EST: ATGCCCAAGAAAA GACCTGTCGACAGGGTGGCTTCGTTGTGACCCTGGTCCTATGTTTAAGCCAEST: gi|29681975|gb|CB678250.1|CB678250
genomic: ATGCCCAAGAAAAgtgagatatc ... atgatttcagGACCTGTCGACAGGGTGGCTTCGTTGTGACCCTGGTCCTATGTTTAAGCCA
EST: TTAGCAAATGTAATGGGCCGTTTCCAATGGTTGACATGCCCAAGAAAA GACCTGTCGACAGGGTGGCTTCGTTGTGACCCTGGTCCTATGTTTAAGCCAEST: gi|29671304|gb|CB667579.1|CB667579
genomic: TTAGCAAATGTAATGGGCCGTTTCCAATGGTTGACATGCCCAAGAAAAgtgagatatc ... atgatttcagGACCTGTCGACAGGGTGGCTTCGTTGTGACCCTGGTCCTATGTTTAAGCCA
EST: TTCCAATGGTTGACATGCCCAAGAAAA GACCTGTCGACAGGGTGGCTTCGTTGTGACCCTGGTCCTATGTTTAAGCCA
genomic: TTCCAATGGTTGACATGCCCAAGAAAAgtgagatatc ... atgatttcagGACCTGTCGACAGGGTGGCTTCGTTGTGACCCTGGTCCTATGTTTAAGCCA
tacacaatttgctactgtgattcttttcttatatttatcacgcaaatgatttcagGACCTGTCGACAGGGTGGCTTCGTTGTGACCCTGGTCCTATGTTTAAGCCAGAACATTATTCTTTGGGAGAATGGGTGCCAAAGGGG
tgattcttttcttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagatatcatttcctttggaatgtgattgtgagttgtctacacaatttgctactgtgattcttttcttatatttatcacgcaaatgatttcagGACCTGTCGACAGGGTGGCTTCGTTGTGACCCTGGTCCTATGTTTAAGCCAGAACATTATTCTTTGGGAGAATGGGTGCCAAAGGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA