1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtattatccaacagttatatttcatgttttgcgaaatggcattacaatggtaaagatatttctagctcgtgcttggtttttcataaagaatttgtttttcagGCGTACTGGAATAATAATTGGAAGCAGAGAGGCAGATCCAATGTGGCATGGTTCGAAGTGGAAATGTTTAGTG
species | Oryza sativa |
transcript | LOC_Os01g48060.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGAATGAGATTCAAATTGAGATATGAGAGTGAGGATGCTTCTGAAAGAAG GCGTACTGGAATAATAATTGGAAGCAGAGAGGCAGACCCAATGTGGCATGGEST: gi|58672722|gb|CK061408.1|CK061408
genomic: GGAATGCGATTCAAATTGAGATATGAGAGTGAGGATGCTTCTGAAAGAAGgtattatcca ... tgtttttcagGCGTACTGGAATAATAATTGGAAGCAGAGAGGCAGATCCAATGTGGCATGG
EST: GGAATGAGATTCAAATTGAGATATGAGAGTGAGGATGCTTCTGAAAGAAG GCGTACTGGAATAATAATTGGAAGCAGAGAGGCAGACCCAATGTGGCATGGEST: gi|8857852|gb|AU095170.1|AU095170
genomic: GGAATGCGATTCAAATTGAGATATGAGAGTGAGGATGCTTCTGAAAGAAGgtattatcca ... tgtttttcagGCGTACTGGAATAATAATTGGAAGCAGAGAGGCAGATCCAATGTGGCATGG
EST: GGAATGCGATTCAAATTGAGATATGAGAGTGAGGATGCTTCTGAAAGAAG GCGTACTGGAATAATAATTGGAAGCAGAGAGGCAGATCCAATGTGGCATGGEST: gi|58659436|gb|CK048116.1|CK048116
genomic: GGAATGCGATTCAAATTGAGATATGAGAGTGAGGATGCTTCTGAAAGAAGgtattatcca ... tgtttttcagGCGTACTGGAATAATAATTGGAAGCAGAGAGGCAGATCCAATGTGGCATGG
EST: GGAATGAGATTCAAATTGAGATATGAGAGTGAGGGTGCTTCTGAAAGAAG GCGTACTGGAATAATAATTGGAAGCAGAGAGGCAGACCCAATGTGGCATGGEST: gi|58596807|gb|CK007335.1|CK007335
genomic: GGAATGCGATTCAAATTGAGATATGAGAGTGAGGATGCTTCTGAAAGAAGgtattatcca ... tgtttttcagGCGTACTGGAATAATAATTGGAAGCAGAGAGGCAGATCCAATGTGGCATGG
EST: GCTTCTGAAAGAAG GCGTACTGGAATAATAATTGGAAGCAGAGAGGCAGACCCAATGTGGCATGG
genomic: GCTTCTGAAAGAAGgtattatcca ... tgtttttcagGCGTACTGGAATAATAATTGGAAGCAGAGAGGCAGATCCAATGTGGCATGG
tggtaaagatatttctagctcgtgcttggtttttcataaagaatttgtttttcagGCGTACTGGAATAATAATTGGAAGCAGAGAGGCAGATCCAATGTGGCATGGTTCGAAGTGGAAATGTTTAGTG
tttgtttttc CT-rich tract
tttttcataaagaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattatccaacagttatatttcatgttttgcgaaatggcattacaatggtaaagatatttctagctcgtgcttggtttttcataaagaatttgtttttcagGCGTACTGGAATAATAATTGGAAGCAGAGAGGCAGATCCAATGTGGCATGGTTCGAAGTGGAAATGTTTAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA