1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtacaactttaaatccacatgagcagtgtagctcttgtattaccctcatatctgggtagattttagtaacgaacatcccacctgtcatttttctcagGATGGCTAGCCAACCGGCCGCTTCAAATGCAAGGCCACCGACCGTGCAGATCCGCGGGCAACCTGTCAACCAGAAGACGTCGTGCTGCTCGTCCTAA
species | Oryza sativa |
transcript | LOC_Os01g08450.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACTAATGTGGAGCAGGCCTTCATGGCTATGGCCGCATCCATCAAGGACAG GATGGCTAGCCAACCGGCCGCTTCAAATGCAAGGCCACCGACCGTGCAGATEST: gi|33797391|gb|CF324558.1|CF324558
genomic: ACTAATGTGGAGCAGGCCTTCATGGCTATGGCCGCATCCATCAAGGACAGgtacaacttt ... tttttctcagGATGGCTAGCCAACCGGCCGCTTCAAATGCAAGGCCACCGACCGTGCAGAT
EST: ACTAATGTGGAGCAGGCCTTCATGGCTATGGCCGCATCCATCAAGGACAG GATGGCTAGCCAACCGGCCGCTTCAAATGCAAEST: gi|4969256|gb|AU066160.1|AU066160
genomic: ACTAATGTGGAGCAGGCCTTCATGGCTATGGCCGCATCCATCAAGGACAGgtacaacttt ... tttttctcagGATGGCTAGCCAACCGGCCGCTTCAAATGCAA
EST: ACTAATGTGGAGCAGGCCTTCATGGCTATGGCCGCATCCATCAAGGACAG GATGGCTAGCCAACCGGCCGCTTCAAATGCAAGGCCACCGACCGTGCAGAT
genomic: ACTAATGTGGAGCAGGCCTTCATGGCTATGGCCGCATCCATCAAGGACAGgtacaacttt ... tttttctcagGATGGCTAGCCAACCGGCCGCTTCAAATGCAAGGCCACCGACCGTGCAGAT
ccctcatatctgggtagattttagtaacgaacatcccacctgtcatttttctcagGATGGCTAGCCAACCGGCCGCTTCAAATGCAAGGCCACCGACCGTGCAGATCCGCGGGCAACCTGTCAACCAGAAGACGTCGTGCTGCTCGTCCTAA
tagtaac putative branch site (score: 1)
cctgtcatttttctc putative PPT
attttagtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaactttaaatccacatgagcagtgtagctcttgtattaccctcatatctgggtagattttagtaacgaacatcccacctgtcatttttctcagGATGGCTAGCCAACCGGCCGCTTCAAATGCAAGGCCACCGACCGTGCAGATCCGCGGGCAACCTGTCAACCAGAAGACGTCGTGCTGCTCGTCCTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT