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...cctgtttccatgatggcgaataggtggttgacctatgcactagggaatagggatatattcatcatctctggctgacacattctgtaactattctccgcagGAGCCGTGAGTTCCTTTGGCAAGAAGGGCATACAGCTTTTGCAACTAAAGAGGAGGCTGACGAAGAG
species | Oryza sativa |
transcript | LOC_Os12g25710.4 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGGTGTAACGTCGTGCGATGGGAGTTTAGCAATCCAACTCCATTCATAAG GAGCCGTGAGTTCCTTTGGCAAGAAGGGCATACAGCTTTTGCAACTAAAGAEST: gi|58690340|gb|CK079027.1|CK079027
genomic: TGGTGTAACGTCGTGCGATGGGAGTTTAGCAATCCAACTCCATTCATAAGgtagtcaatt ... ttctccgcagGAGCCGTGAGTTCCTTTGGCAAGAAGGGCATACAGCTTTTGCAACTAAAGA
EST: TGGTGTAACGTCGTGCGATGGGAGTTTAGCAATCCAACTCCATTCATAAG GAGCCGTGAGTTCCTTTGGCAAGAAGGGCATACAGCTTTTGCAACTAAAGAEST: gi|88312613|gb|CI587521.1|CI587521
genomic: TGGTGTAACGTCGTGCGATGGGAGTTTAGCAATCCAACTCCATTCATAAGgtagtcaatt ... ttctccgcagGAGCCGTGAGTTCCTTTGGCAAGAAGGGCATACAGCTTTTGCAACTAAAGA
EST: TGGTGTAACGTCGTGCGATGGGAGTTTAGCAATCCAACTCCATTCATAAT GAGCCGTGAGTTCCTTTGGCAAGAAGGGCATACAGCTTTTTGCAACTAAAGEST: gi|12404672|gb|AU166273.1|AU166273
genomic: TGGTGTAACGTCGTGCGATGGGAGTTTAGCAATCCAACTCCATTCATAAGgtagtcaatt ... ttctccgcagGAGCCGTGAGTTCCTTTGGCAAGAAGGGCATACAGCTTTT-GCAACTAAAG
EST: TGGTGTAACGTCGTGCGATGGGAGTTTAGCAATCCAACTCCATTCATAAG GAGCCGTGAGTTCCTTTGGCAAGAAGGGCATACAGCTTTTGCAACTAAAGAEST: gi|33811197|gb|CF331488.1|CF331488
genomic: TGGTGTAACGTCGTGCGATGGGAGTTTAGCAATCCAACTCCATTCATAAGgtagtcaatt ... ttctccgcagGAGCCGTGAGTTCCTTTGGCAAGAAGGGCATACAGCTTTTGCAACTAAAGA
EST: GATGGGAGTTTAGCAATCCAACTCCATTCATAAG GAGCCGTGAGTTCCTTTGGCAAGAAGGGCATACAGCTTTTGCAACTAAAGAEST: gi|58674015|gb|CK062701.1|CK062701
genomic: GATGGGAGTTTAGCAATCCAACTCCATTCATAAGgtagtcaatt ... ttctccgcagGAGCCGTGAGTTCCTTTGGCAAGAAGGGCATACAGCTTTTGCAACTAAAGA
EST: TGGTGTAACGTCGTGCGATGGGAGTTTAGCAATCCAACTCCATTCATAAG GAGCCGTGAGTTCCTTTGGCAAGAAGGGCATACAGCTTTTGCAACTAAAGA
genomic: TGGTGTAACGTCGTGCGATGGGAGTTTAGCAATCCAACTCCATTCATAAGgtagtcaatt ... ttctccgcagGAGCCGTGAGTTCCTTTGGCAAGAAGGGCATACAGCTTTTGCAACTAAAGA
aatagggatatattcatcatctctggctgacacattctgtaactattctccgcagGAGCCGTGAGTTCCTTTGGCAAGAAGGGCATACAGCTTTTGCAACTAAAGAGGAGGCTGACGAAGAG
ctgtaac putative branch site (score: 3)
ctattctcc CT-rich tract
atatattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctgtttccatgatggcgaataggtggttgacctatgcactagggaatagggatatattcatcatctctggctgacacattctgtaactattctccgcagGAGCCGTGAGTTCCTTTGGCAAGAAGGGCATACAGCTTTTGCAACTAAAGAGGAGGCTGACGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA