1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gttttaagatgaatgttttgtgtcggtaggatgttgagacagaataatttggaaggcaaagtacaatgtttgaaagggttcacttcttgctgctttgcagTGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAA
species | Oryza sativa |
transcript | LOC_Os11g34300.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGTTTCGCCCTCAACTATATATGGAGCTGAGCATCTACTGCGCCTTTTTG TGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCAEST: gi|9865404|gb|AU101154.1|AU101154
genomic: TGTTTCGCCCTCAACTATATATGGAGCTGAGCATCTACTGCGCCTTTTTGgtatgtgcag ... tgctttgcagTGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCA
EST: TGTTTCGCCCTCAACTATATATGGAGCTGAGCATCTACTGCGCCTTTTTG TGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCAEST: gi|86844258|gb|CI337629.1|CI337629
genomic: TGTTTCGCCCTCAACTATATATGGAGCTGAGCATCTACTGCGCCTTTTTGgtatgtgcag ... tgctttgcagTGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCA
EST: TGTTTCGCCCTCAACTATATATGGAGCTGAGCATCTACTGCCCCTTTTTG TGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCAEST: gi|109712745|gb|CI105353.1|CI105353
genomic: TGTTTCGCCCTCAACTATATATGGAGCTGAGCATCTACTGCGCCTTTTTGgtatgtgcag ... tgctttgcagTGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCA
EST: TGTTTCGCCCTCAACTATATATGGAGCTGAGCATCTACTGCGCCTTTTTG TGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCAEST: gi|88491380|gb|CI428652.1|CI428652
genomic: TGTTTCGCCCTCAACTATATATGGAGCTGAGCATCTACTGCGCCTTTTTGgtatgtgcag ... tgctttgcagTGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCA
EST: TGTTTCGCCCTCAACTATATATGGAGCTGAGCATCTACTGCGCCTTTTTG TGAAATTGCCGGAGGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCEST: gi|86539094|gb|CI179300.1|CI179300
genomic: TGTTTCGCCCTCAACTATATATGGAGCTGAGCATCTACTGCGCCTTTTTGgtatgtgcag ... tgctttgcagTGAAATTGCCGGA-GCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTC
EST: TGTTTCGCCCTCAACTATATATGGAGCTGAGCATCTACTGCGCCTTTTTG TGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCAEST: gi|58679417|gb|CK068104.1|CK068104
genomic: TGTTTCGCCCTCAACTATATATGGAGCTGAGCATCTACTGCGCCTTTTTGgtatgtgcag ... tgctttgcagTGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCA
EST: TGTTTCGCCCTCAACTATATATGGAGCTGAGCATCTACTGCGCCTTTTTG TGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCAEST: gi|66914665|gb|CX101513.1|CX101513
genomic: TGTTTCGCCCTCAACTATATATGGAGCTGAGCATCTACTGCGCCTTTTTGgtatgtgcag ... tgctttgcagTGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCA
EST: TGTTTCGCCCTCAACTATATATGGAGCTGAGCATCTACTGCGCCTTTTTG TGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCAEST: gi|88983252|gb|CI020816.1|CI020816
genomic: TGTTTCGCCCTCAACTATATATGGAGCTGAGCATCTACTGCGCCTTTTTGgtatgtgcag ... tgctttgcagTGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCA
EST: TGTTTCGCCCTCAACTATATATGGAGCTGAGCATCTACTGCGCCTTTTTG TGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCAEST: gi|86844406|gb|CI337712.1|CI337712
genomic: TGTTTCGCCCTCAACTATATATGGAGCTGAGCATCTACTGCGCCTTTTTGgtatgtgcag ... tgctttgcagTGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCA
EST: TGTTTCGCCCTCAACTATATATGGAGCTGAGCATCTACTGCGCCTTTTTG TGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCAEST: gi|88288783|gb|CI517914.1|CI517914
genomic: TGTTTCGCCCTCAACTATATATGGAGCTGAGCATCTACTGCGCCTTTTTGgtatgtgcag ... tgctttgcagTGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCA
EST: TGTTTCGCCCTCAACTATATATGGAGCTGAGCATTTACTGCGCCTTTTTG TGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCAEST: gi|86870999|gb|CI326818.1|CI326818
genomic: TGTTTCGCCCTCAACTATATATGGAGCTGAGCATCTACTGCGCCTTTTTGgtatgtgcag ... tgctttgcagTGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCA
EST: TGTTTCGCCCTCAAC--TATATGGAGCTGAGCATCTACTGCGCCTTTTTG TGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCAEST: gi|15858178|gb|BI810990.1|BI810990
genomic: TGTTTCGCCCTCAACTATATATGGAGCTGAGCATCTACTGCGCCTTTTTGgtatgtgcag ... tgctttgcagTGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCA
EST: TGCGCCTTTTTG TGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCAEST: gi|89173985|gb|CI041878.1|CI041878
genomic: TGCGCCTTTTTGgtatgtgcag ... tgctttgcagTGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCA
EST: TGTTTCGCCCTCAACTATATATGGAGCTGAGCATCTACTGCGCCTTTTTG TGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCAEST: gi|29665212|gb|CB661487.1|CB661487
genomic: TGTTTCGCCCTCAACTATATATGGAGCTGAGCATCTACTGCGCCTTTTTGgtatgtgcag ... tgctttgcagTGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCA
EST: TGTTTCGCCCTCAACTATATATGGAGCTGAGCATCTACTGCGCCTTTTTG TGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCAEST: gi|86867570|gb|CI337935.1|CI337935
genomic: TGTTTCGCCCTCAACTATATATGGAGCTGAGCATCTACTGCGCCTTTTTGgtatgtgcag ... tgctttgcagTGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCA
EST: TGTTTCGCCCTCAACTATATATGGAGCTGAGCATCTACTGCGCCTTTTTG TGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCAEST: gi|13165184|gb|AU173981.1|AU173981
genomic: TGTTTCGCCCTCAACTATATATGGAGCTGAGCATCTACTGCGCCTTTTTGgtatgtgcag ... tgctttgcagTGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCA
EST: TGTTTCGCCCTCAACTATATATGGAGCTGAGCATNTACTGCGCCTTTTTG TGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCNCTCAEST: gi|88476535|gb|CI413806.1|CI413806
genomic: TGTTTCGCCCTCAACTATATATGGAGCTGAGCATCTACTGCGCCTTTTTGgtatgtgcag ... tgctttgcagTGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCA
EST: TGTTTCGCCCTCAACTATATATGGAGCTGAGCATCTACTGCGCCTTTTTG TGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCAEST: gi|88830125|gb|CI074797.1|CI074797
genomic: TGTTTCGCCCTCAACTATATATGGAGCTGAGCATCTACTGCGCCTTTTTGgtatgtgcag ... tgctttgcagTGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCA
EST: TGTTTCGCCCTGAACTATATATGGAGCTGAGCATCTACTGCGCCTTTTTG TGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCA
genomic: TGTTTCGCCCTCAACTATATATGGAGCTGAGCATCTACTGCGCCTTTTTGgtatgtgcag ... tgctttgcagTGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCA
aatttggaaggcaaagtacaatgtttgaaagggttcacttcttgctgctttgcagTGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAA
cttcttgctgcttt CT-rich tract
aatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttaagatgaatgttttgtgtcggtaggatgttgagacagaataatttggaaggcaaagtacaatgtttgaaagggttcacttcttgctgctttgcagTGAAATTGCCGGAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA