1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatgatcataaccattgcaatcatttattcttcactggtcatctgtgatgttttctgattctgttgaacagAATCGGTGGCATAACCATCATGCGGAAAGGAAAAGCAGATATAATCAGTGATGGCAAAACTG
species | Oryza sativa |
transcript | LOC_Os11g17610.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCACTATGCCAAAA AATCGGTGGCATAACCATCATGCGGAAAGGAAAAGCAGATATAATCAGTGAEST: gi|58590918|gb|CF989226.1|CF989226
genomic: GCACTATGCCAAAAgtatgatcat ... tgttgaacagAATCGGTGGCATAACCATCATGCGGAAAGGAAAAGCAGATATAATCAGTGA
EST: GAAGTAAATGAGGAAAACGCTTCTGAACAACTTACTGCACTATGCCAAAA AATCGGTGGCATAACCATCATGCGGAEST: gi|218499213|gb|FG962191.1|FG962191
genomic: GAAGTAAATGAGGAAAACGCTTCTGAACAACTTACTGCACTATGCCAAAAgtatgatcat ... tgttgaacagAATCGGTGGCATAACCATCATGCGGA
EST: GAAGTAAATGAGGAAAACGCTTCTGAACAACTTACTGCACTATGCCAAAA AATCGGTGGCATAACCATCATGCGGAAAGGAAAAGCAGATATAATCAGTGA
genomic: GAAGTAAATGAGGAAAACGCTTCTGAACAACTTACTGCACTATGCCAAAAgtatgatcat ... tgttgaacagAATCGGTGGCATAACCATCATGCGGAAAGGAAAAGCAGATATAATCAGTGA
gcaatcatttattcttcactggtcatctgtgatgttttctgattctgttgaacagAATCGGTGGCATAACCATCATGCGGAAAGGAAAAGCAGATATAATCAGTGATGGCAAAACTG
ttctgat putative branch site (score: 7)
ttctgtt CT-rich tract
atttattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatcataaccattgcaatcatttattcttcactggtcatctgtgatgttttctgattctgttgaacagAATCGGTGGCATAACCATCATGCGGAAAGGAAAAGCAGATATAATCAGTGATGGCAAAACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT