1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...actacgaagggttttctcttttcattatgtttctaacaatttttttccctgttcttaaaaaaatgggagaacgaatttcttatatgagccataattgcagGCTATACATAATGCAGAGAAGGGAGAGCCAGCTGCCTTGCTACTTTCACCTAGGATAGCATCAGCAATGCCTGGTGTGGAATCCACGAGTAATGGAAGCC
species | Oryza sativa |
transcript | LOC_Os09g29470.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCCACTATTCCTTGTTATCGATAGTGAAAATAGTCATGCATTC-A---AG GCTATACATAATGCAGAGAAGGGAGAGCCAGCTGCCTTGCTACTTTCACCTEST: gi|218494056|gb|FG946879.1|FG946879
genomic: TCCACTATTCCTTGTTATCGATAGTGAAAATAGTCATGCATTCAAGGCAGgtttgtcaga ... ataattgcagGCTATACATAATGCAGAGAAGGGAGAGCCAGCTGCCTTGCTACTTTCACCT
EST: TCCACTATTCCTTGTTATCGATAGTGAAAATAGTCATGCATTC-A---AG GCTATACATAATGCAGAGAAGGGAGAGCCAGCTGCCTTGCTACTTTCACCTEST: gi|29637839|gb|CB642848.1|CB642848
genomic: TCCACTATTCCTTGTTATCGATAGTGAAAATAGTCATGCATTCAAGGCAGgtttgtcaga ... ataattgcagGCTATACATAATGCAGAGAAGGGAGAGCCAGCTGCCTTGCTACTTTCACCT
EST: TCCACTATTCCTTGTTATCGATAGTGAAAATAGTCATGCATTCAAGGC-- --TATACATAATGCAGAGAAGGGAGAGCCAGCTGCCTTGCTACTTTCACCT
genomic: TCCACTATTCCTTGTTATCGATAGTGAAAATAGTCATGCATTCAAGGCAGgtttgtcaga ... ataattgcagGCTATACATAATGCAGAGAAGGGAGAGCCAGCTGCCTTGCTACTTTCACCT
tccctgttcttaaaaaaatgggagaacgaatttcttatatgagccataattgcagGCTATACATAATGCAGAGAAGGGAGAGCCAGCTGCCTTGCTACTTTCACCTAGGATAGCATCAGCAATGCCTGGTGTGGAATCCACGAGTAATGGAAGCC
ttcttaaaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actacgaagggttttctcttttcattatgtttctaacaatttttttccctgttcttaaaaaaatgggagaacgaatttcttatatgagccataattgcagGCTATACATAATGCAGAGAAGGGAGAGCCAGCTGCCTTGCTACTTTCACCTAGGATAGCATCAGCAATGCCTGGTGTGGAATCCACGAGTAATGGAAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG