1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atgcagatatcatggaatggaagccctgattaatgtagtgaaagggatattgaaaataactgcaatgtgatatcatttaaattgttttgaaaaactgtagCTGGAGGAAAGCAACCATGTTCGCGGGCAGCAAGTGTGGGAGCAGGGCTGCAACTTAATTGGCTATGAACGTCAGCCTGAAGTGCAGCAGCCTCTTCACG
species | Oryza sativa |
transcript | LOC_Os08g41950.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAACAAATGGTTTCTGAAGCAAATAGATGCCTTAGGAGAAAA CTGGAGGAAAGCAACCATGTTCGCGGGCAGCAAGTGTGGGAGCAGGGCTGCEST: gi|163927411|gb|EG713875.1|EG713875
genomic: GAACAAATGGTTTCTGAAGCAAATAGATGCCTTAGGAGAAAAgtaagttata ... aaaactgtagCTGGAGGAAAGCAACCATGTTCGCGGGCAGCAAGTGTGGGAGCAGGGCTGC
EST: GAAAGGAACAAATGGTTTCTGAAGCAAATAGATGCCTTAGGAGAAAA CTGGAGGAAAGCAACCATGTTCGCGGGCAGCAAGTGTGGGAGCAGGGCTGCEST: gi|40491399|gb|BX901494.1|BX901494
genomic: GAAAGGAACAAATGGTTTCTGAAGCAAATAGATGCCTTAGGAGAAAAgtaagttata ... aaaactgtagCTGGAGGAAAGCAACCATGTTCGCGGGCAGCAAGTGTGGGAGCAGGGCTGC
EST: GAACAAATGGTTTCTGAAGCAAATAGATGCCTTAGGAGAAAA CTGGAGGAAAGCAACCATGTTCGCGGGCAGCAAGTGTGGGAGCAGGGCTGCEST: gi|15847472|gb|BI795748.1|BI795748
genomic: GAACAAATGGTTTCTGAAGCAAATAGATGCCTTAGGAGAAAAgtaagttata ... aaaactgtagCTGGAGGAAAGCAACCATGTTCGCGGGCAGCAAGTGTGGGAGCAGGGCTGC
EST: GAACAAATGGTTTCTGAA-C-AATAGATGCCTTAGGAGAAAA CTGGAGGAAAGCAACCATGTTC-C-GGCAGCAAGTGTGGGAGCA-GGCTGC
genomic: GAACAAATGGTTTCTGAAGCAAATAGATGCCTTAGGAGAAAAgtaagttata ... aaaactgtagCTGGAGGAAAGCAACCATGTTCGCGGGCAGCAAGTGTGGGAGCAGGGCTGC
gatattgaaaataactgcaatgtgatatcatttaaattgttttgaaaaactgtagCTGGAGGAAAGCAACCATGTTCGCGGGCAGCAAGTGTGGGAGCAGGGCTGCAACTTAATTGGCTATGAACGTCAGCCTGAAGTGCAGCAGCCTCTTCACG
aaataac putative branch site (score: 206)
tgatatcatttaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcagatatcatggaatggaagccctgattaatgtagtgaaagggatattgaaaataactgcaatgtgatatcatttaaattgttttgaaaaactgtagCTGGAGGAAAGCAACCATGTTCGCGGGCAGCAAGTGTGGGAGCAGGGCTGCAACTTAATTGGCTATGAACGTCAGCCTGAAGTGCAGCAGCCTCTTCACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
-tgcagat
- - - - - catggaa
- - - - - - - - - - -agccctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgata