1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtattttcattgtcttatcatacatcgtgggcatgttaagtatggtacaaaatgacaaattttttgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA
species | Oryza sativa |
transcript | LOC_Os08g41460.6 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|33675916|gb|CF304155.1|CF304155
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: GACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTAGAEST: gi|33824610|gb|CF338118.1|CF338118
genomic: GACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|33684521|gb|CF312760.1|CF312760
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|3763529|gb|AU030281.1|AU030281
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|33682743|gb|CF310982.1|CF310982
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|33684081|gb|CF312320.1|CF312320
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|58592436|gb|CF990744.1|CF990744
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|29683116|gb|CB679391.1|CB679391
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|86418696|gb|CI053497.1|CI053497
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|29684942|gb|CB681217.1|CB681217
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|33681150|gb|CF309389.1|CF309389
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|33675090|gb|CF303329.1|CF303329
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|88852696|gb|CI008889.1|CI008889
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|88258912|gb|CI359302.1|CI359302
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|15855565|gb|BI808377.1|BI808377
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: TAGCACA-GCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGC-ATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|87029164|gb|CI276432.1|CI276432
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|33676087|gb|CF304326.1|CF304326
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|29662553|gb|CB658828.1|CB658828
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|29683115|gb|CB679390.1|CB679390
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|89181923|gb|CI113429.1|CI113429
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGGCTATAEST: gi|25806680|gb|CA762641.1|CA762641
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|86843718|gb|CI339709.1|CI339709
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: GTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|29663222|gb|CB659497.1|CB659497
genomic: GTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|86889949|gb|CI319938.1|CI319938
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: TAGCACAGGC-ATTACGAGTGCCATAGTGAA-GACTTTTTAATTTTGAA- GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|15854892|gb|BI807704.1|BI807704
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGAC-TTTTAA-TTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|86873804|gb|CI341237.1|CI341237
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: ATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|33675688|gb|CF303927.1|CF303927
genomic: ATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|163920678|gb|EG710011.1|EG710011
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|29615644|gb|CB620656.1|CB620656
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|33675365|gb|CF303604.1|CF303604
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|88259834|gb|CI364325.1|CI364325
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: AATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|33675509|gb|CF303748.1|CF303748
genomic: AATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|33675427|gb|CF303666.1|CF303666
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|86490518|gb|CI133151.1|CI133151
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: CGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|88253111|gb|CI351737.1|CI351737
genomic: CGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: AATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|88258920|gb|CI359310.1|CI359310
genomic: AATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: AATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|86505080|gb|CI147713.1|CI147713
genomic: AATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|88966192|gb|CI013068.1|CI013068
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|88257914|gb|CI360500.1|CI360500
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: AGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|86489048|gb|CI131681.1|CI131681
genomic: AGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATAEST: gi|33675483|gb|CF303722.1|CF303722
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
atacatcgtgggcatgttaagtatggtacaaaatgacaaattttttgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA
ttttgat putative branch site (score: 4)
tttttt CT-rich tract
aaaatgacaaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattttcattgtcttatcatacatcgtgggcatgttaagtatggtacaaaatgacaaattttttgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA