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...tagtttcatgttaattgtctgctaagttaagtgcctaactgcccactgactgttgcaatacttgcatcatataatgtttgctattatttatattgttcagGTTAAGATGGCTGTGCAGTACATGCGCCGTGTAATTCAAAGAAGAGCTAAGTTTGATATAATGGATCTTGATGTTGTTCAG
species | Oryza sativa |
transcript | LOC_Os06g40730.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TAATGATGGAGCTTGTAGATGTTTACAAAATCCGAGTTCCTAAGTTCACG GTTAAGATGGCTGTGCAGTACATGCGCCGTGTAATTCAAAGAAGAGCTAAGEST: gi|58686455|gb|CK075142.1|CK075142
genomic: TAATGATGGAGCTTGTAGATGTTTACAAAATCCGAGTTCCTAAGTTCACGgtatgcttgt ... tattgttcagGTTAAGATGGCTGTGCAGTACATGCGCCGTGTAATTCAAAGAAGAGCTAAG
EST: TAATGATGGAGCTTGTAGATGTTTACAAAATCCGAGTTCCTAAGTTCACG GTTAAGATGGCTGTGCAGTACATGCGCCGTGTAATTCAAAGAAGAGCTAAG
genomic: TAATGATGGAGCTTGTAGATGTTTACAAAATCCGAGTTCCTAAGTTCACGgtatgcttgt ... tattgttcagGTTAAGATGGCTGTGCAGTACATGCGCCGTGTAATTCAAAGAAGAGCTAAG
ctgactgttgcaatacttgcatcatataatgtttgctattatttatattgttcagGTTAAGATGGCTGTGCAGTACATGCGCCGTGTAATTCAAAGAAGAGCTAAGTTTGATATAATGGATCTTGATGTTGTTCAG
cactgac putative branch site (score: 24)
atcatataatgtttgc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtttcatgttaattgtctgctaagttaagtgcctaactgcccactgactgttgcaatacttgcatcatataatgtttgctattatttatattgttcagGTTAAGATGGCTGTGCAGTACATGCGCCGTGTAATTCAAAGAAGAGCTAAGTTTGATATAATGGATCTTGATGTTGTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- -tttcatg
- - - - - - - -tgtctgc
- - - - - - - - - - - - - - - gtgccta
- - - - - - - - - - - - - - - - - - - ctgccca
- - - - - - - - - - - - - - - - - - - - - - - - -ctgttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgc