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...aaatggagggaataacacatttgtatgatttaggtgttttgactagtaaaatattcttccatatgagagataattctcagtgtgcatactgtgctttcagATATGTTGCTCTGAACATGCTTATGAAGGCCATGGAGGTAGACACGCAAGCAGTGCAGAGGCATAGAGCAACAATATTAGAGTGTGTCAAG
species | Oryza sativa |
transcript | LOC_Os06g07090.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCAATCAATATCTTGGGTAGATTTCTGTCCAACCGTGATAATAACATCAG ATATGTTGCTCTGAACATGCTTATGAAGGCCATGGAGGTAGACACGCAAGCEST: gi|58654587|gb|CK043267.1|CK043267
genomic: GCAATCAATATCTTGGGTAGATTTCTGTCCAACCGTGATAATAACATCAGgtaattcact ... gtgctttcagATATGTTGCTCTGAACATGCTTATGAAGGCCATGGAGGTAGACACGCAAGC
EST: GCAATCAATATCTTGGGTAGATTTCTGTCCAACCGTGATAAT-ACATCAG ATATGTTGCTCTGAACATGCTTATGAAGGCCATGGAGGTAGACACGCAAGCEST: gi|29672354|gb|CB668629.1|CB668629
genomic: GCAATCAATATCTTGGGTAGATTTCTGTCCAACCGTGATAATAACATCAGgtaattcact ... gtgctttcagATATGTTGCTCTGAACATGCTTATGAAGGCCATGGAGGTAGACACGCAAGC
EST: GCAATCAATATCTTGGGTAGATTTCTGTCCAACCGTGATAATAACATCAG ATATGTTGCTCTGAACATGCTTATGAAGGCCATGGAGGTAGACACGCAAGCEST: gi|58673720|gb|CK062406.1|CK062406
genomic: GCAATCAATATCTTGGGTAGATTTCTGTCCAACCGTGATAATAACATCAGgtaattcact ... gtgctttcagATATGTTGCTCTGAACATGCTTATGAAGGCCATGGAGGTAGACACGCAAGC
EST: GCAATCAATATCTTGGGTAGATTTCTGTCCAACCGTGATAATAACATCAG ATATGTTGCTCTGAACATGCTTATGAAGGCCATGGAGGTAGACACGCAAGCEST: gi|88351874|gb|CI624679.1|CI624679
genomic: GCAATCAATATCTTGGGTAGATTTCTGTCCAACCGTGATAATAACATCAGgtaattcact ... gtgctttcagATATGTTGCTCTGAACATGCTTATGAAGGCCATGGAGGTAGACACGCAAGC
EST: GCAATCAATATCTTGGGTAGATCTCTGTACAACCGTGATAATAACATCAG ATATGTTGCTCTGAACATGCTTATGAAGGCCATGGAGGTAGACACGCAAGCEST: gi|58655701|gb|CK044381.1|CK044381
genomic: GCAATCAATATCTTGGGTAGATTTCTGTCCAACCGTGATAATAACATCAGgtaattcact ... gtgctttcagATATGTTGCTCTGAACATGCTTATGAAGGCCATGGAGGTAGACACGCAAGC
EST: GCAATCAATATCTTGGGTAGATTTCTGTCCAACCGTGATAATAACATCAG ATATGTTGCTCTGAACATGCTTATGAAGGCCATGGAGGTAGACACGCAAGC
genomic: GCAATCAATATCTTGGGTAGATTTCTGTCCAACCGTGATAATAACATCAGgtaattcact ... gtgctttcagATATGTTGCTCTGAACATGCTTATGAAGGCCATGGAGGTAGACACGCAAGC
gtaaaatattcttccatatgagagataattctcagtgtgcatactgtgctttcagATATGTTGCTCTGAACATGCTTATGAAGGCCATGGAGGTAGACACGCAAGCAGTGCAGAGGCATAGAGCAACAATATTAGAGTGTGTCAAG
tgctttc CT-rich tract
atattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatggagggaataacacatttgtatgatttaggtgttttgactagtaaaatattcttccatatgagagataattctcagtgtgcatactgtgctttcagATATGTTGCTCTGAACATGCTTATGAAGGCCATGGAGGTAGACACGCAAGCAGTGCAGAGGCATAGAGCAACAATATTAGAGTGTGTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA