1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aagcataacataatgtgcccctgcacttactttttttttttgtgtacactataggtgtttgaatccctcattgacttgtctttttatgacatccttgcagGCCATTGAAGTATCAAGTAATGAGTATGAACCTTCAGAGAAAGATATAATATATGCTGAAGGAGTAACACAAGGGAATGGATTAGCCTTCATTGAGTTTA
species | Oryza sativa |
transcript | LOC_Os06g02130.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGACGAATTGCATTTTCTCCCTGATGTTGCCGAATATTTCTTGAGCAGG GCCATTGAAGTATCAAGTAATGAGTATGAACCTTCAGAGAAAGATATAATAEST: gi|29667807|gb|CB664082.1|CB664082
genomic: AAGACGAATTGCATTTTCTCCCTGATGTTGCCGAATATTTCTTGAGCAGGgtatttaact ... atccttgcagGCCATTGAAGTATCAAGTAATGAGTATGAACCTTCAGAGAAAGATATAATA
EST: AAGACGAATTGCATTTTCTCCCTGATGTTGCCGAATATTTCTTGAGCAGG GCCATTGAAGTATCAAGTAATGAGTATGAACCTTCAGAGAAAGATATAATAEST: gi|29667761|gb|CB664036.1|CB664036
genomic: AAGACGAATTGCATTTTCTCCCTGATGTTGCCGAATATTTCTTGAGCAGGgtatttaact ... atccttgcagGCCATTGAAGTATCAAGTAATGAGTATGAACCTTCAGAGAAAGATATAATA
EST: AAGACGAATTGCATTTTCTCCCTGATGTTGCCGAATATTTCTTGAGCAGG GCCATTGAAGTATCAAGTAATGAGTATGAACCTTCAGAGAAAGATATAATAEST: gi|2443005|gb|C74776.1|C74776
genomic: AAGACGAATTGCATTTTCTCCCTGATGTTGCCGAATATTTCTTGAGCAGGgtatttaact ... atccttgcagGCCATTGAAGTATCAAGTAATGAGTATGAACCTTCAGAGAAAGATATAATA
EST: AAGACGAATTGCATTTTCTCCCTGATGTTGCCGAATATTTCTTGAGCAGG GCCATTGAAGTATCAAGTAATGAGTATGAACCTTCAGAGAAAGATATAATAEST: gi|33683464|gb|CF311703.1|CF311703
genomic: AAGACGAATTGCATTTTCTCCCTGATGTTGCCGAATATTTCTTGAGCAGGgtatttaact ... atccttgcagGCCATTGAAGTATCAAGTAATGAGTATGAACCTTCAGAGAAAGATATAATA
EST: AAGACGAATTGCATTTTCTCCCTGATGTTGCCGAATATTTCTTGAGCAGG GCCATTGAAGTATCAAGTAATGAGTATGAACCTTCAGAGAAAGATATAATA
genomic: AAGACGAATTGCATTTTCTCCCTGATGTTGCCGAATATTTCTTGAGCAGGgtatttaact ... atccttgcagGCCATTGAAGTATCAAGTAATGAGTATGAACCTTCAGAGAAAGATATAATA
acactataggtgtttgaatccctcattgacttgtctttttatgacatccttgcagGCCATTGAAGTATCAAGTAATGAGTATGAACCTTCAGAGAAAGATATAATATATGCTGAAGGAGTAACACAAGGGAATGGATTAGCCTTCATTGAGTTTA
cattgac putative branch site (score: 3)
catcctt putative PPT
tctttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagcataacataatgtgcccctgcacttactttttttttttgtgtacactataggtgtttgaatccctcattgacttgtctttttatgacatccttgcagGCCATTGAAGTATCAAGTAATGAGTATGAACCTTCAGAGAAAGATATAATATATGCTGAAGGAGTAACACAAGGGAATGGATTAGCCTTCATTGAGTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
-agcataa
- - - - - -aatgtgc
- - - - - - - - - ccctgca
- - - - - - - - - - - - - - - - - - - - - tgtacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttga