1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...agaatttagactgtcaactgaatgtaaatttattttagatatggtgctattttcttgacacggaaataagtaatatctacattttttatggattgtgtagATTGACACCATCTTTGTTGGAGAATCATGCTCTCAAATGCGTGAGTCTGCATTGAGTTTGACAAAATGCTTAGCACAAACTGCACAGAAGACTTTCAGTG
species | Oryza sativa |
transcript | LOC_Os04g58880.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGTTTGTGCTGCTAGACATGTATGAAATAATGTGTGAACTTCAAGCAGAT ATTGACACCATCTTTGTTGGAGAATCATGCTCTCAAATGCGTGAGTCTGCAEST: gi|29630823|gb|CB635832.1|CB635832
genomic: TGTTTGTGCTGCTAGACATGTATGAAATAATGTGTGAACTTCAAGCAGATgtaagtttct ... gattgtgtagATTGACACCATCTTTGTTGGAGAATCATGCTCTCAAATGCGTGAGTCTGCA
EST: TGTTTGTGCTGCTAGACATGTATGAAATAATGTGTGAACTTCAAGCAGAT ATTGACACCATCTTTGTTGGAGAATCATGCTCTCAAATGCGTGAGTCTGCAEST: gi|86821957|gb|CI309340.1|CI309340
genomic: TGTTTGTGCTGCTAGACATGTATGAAATAATGTGTGAACTTCAAGCAGATgtaagtttct ... gattgtgtagATTGACACCATCTTTGTTGGAGAATCATGCTCTCAAATGCGTGAGTCTGCA
EST: TGTTTGTGCTGCTAGACATGTATGAAATAATGTGTGAACTTCAAGCAGAT ATTGACACCATCTTTGTTGGAGAATCATGCTCTCAAATGCGTGAGTCTGEST: gi|58663378|gb|CK052064.1|CK052064
genomic: TGTTTGTGCTGCTAGACATGTATGAAATAATGTGTGAACTTCAAGCAGATgtaagtttct ... gattgtgtagATTGACACCATCTTTGTTGGAGAATCATGCTCTCAAATGCGTGAGTCTG
EST: TGTTTGTGCTGCTAGACATGTATGAAATAATGTGTGAACTTCAAGCAGAT ATTGACACCATCTTTGTTGGAGAATCATGCTCTCAAATGCGTGAGTCTGCAEST: gi|29665182|gb|CB661457.1|CB661457
genomic: TGTTTGTGCTGCTAGACATGTATGAAATAATGTGTGAACTTCAAGCAGATgtaagtttct ... gattgtgtagATTGACACCATCTTTGTTGGAGAATCATGCTCTCAAATGCGTGAGTCTGCA
EST: TGTTTGTGCTGCTAGACATGTATGAAATAATGTGTGAACTTCAAGCAGAT ATTGACACCATCTTTGTTGGAGAATCATGCTCTCAAATGCGTGAGTCTGCA
genomic: TGTTTGTGCTGCTAGACATGTATGAAATAATGTGTGAACTTCAAGCAGATgtaagtttct ... gattgtgtagATTGACACCATCTTTGTTGGAGAATCATGCTCTCAAATGCGTGAGTCTGCA
gctattttcttgacacggaaataagtaatatctacattttttatggattgtgtagATTGACACCATCTTTGTTGGAGAATCATGCTCTCAAATGCGTGAGTCTGCATTGAGTTTGACAAAATGCTTAGCACAAACTGCACAGAAGACTTTCAGTG
tcttgac putative branch site (score: 16)
aaataagtaatatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaatttagactgtcaactgaatgtaaatttattttagatatggtgctattttcttgacacggaaataagtaatatctacattttttatggattgtgtagATTGACACCATCTTTGTTGGAGAATCATGCTCTCAAATGCGTGAGTCTGCATTGAGTTTGACAAAATGCTTAGCACAAACTGCACAGAAGACTTTCAGTG
- - - - - - - - -ctgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaataa