1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgctttttctagatagaatttaggttcttagtgcttactacatcttgtgaggctgacaaatggttatttcattgtcgcagTTTTGCTAATAATAAAGATCTTTGTGGCCCGGGTACTACAAAACCCTGCCCTGGAGCTCCACCTTTTTCTCCACCACCTCCTTTCAATCCCCCAACACCT
species | Oryza sativa |
transcript | LOC_Os04g38480.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCAGGAGAGGTTCCGTCTACTGGCTCCTTTTCACTCTTTACCCCTATAAG TTTTGCTAATAATAAAGATCTTTGTGGCCCGGGTACTACAAAACCCTGCCCEST: gi|29633283|gb|CB638292.1|CB638292
genomic: TCAGGAGAGGTTCCGTCTACTGGCTCCTTTTCACTCTTTACCCCTATAAGgtgctttttc ... attgtcgcagTTTTGCTAATAATAAAGATCTTTGTGGCCCGGGTACTACAAAACCCTGCCC
EST: TCAGGAGAGGTTCCGTCTACTGGCTCCTTTTCACTCTTTACCCCTATAAG TTTTGCTAATAATAAAGATCTTTGTGGCCCGGGTACTACAAAACCCTGCCCEST: gi|58688409|gb|CK077096.1|CK077096
genomic: TCAGGAGAGGTTCCGTCTACTGGCTCCTTTTCACTCTTTACCCCTATAAGgtgctttttc ... attgtcgcagTTTTGCTAATAATAAAGATCTTTGTGGCCCGGGTACTACAAAACCCTGCCC
EST: TCAGGAGAGGTTCCGTCTACTGGCTCCTTTTCACTCTTTAACCCTATAAG TTTTGCTAATAATAAAGATCTTTGTGGCCCGGGTACTACAAAACCCTGCCCEST: gi|13904809|gb|BF889447.1|BF889447
genomic: TCAGGAGAGGTTCCGTCTACTGGCTCCTTTTCACTCTTTACCCCTATAAGgtgctttttc ... attgtcgcagTTTTGCTAATAATAAAGATCTTTGTGGCCCGGGTACTACAAAACCCTGCCC
EST: CAGGGAGAGGTTCCGTCTACTGGCTCCTTTTCACTCTTTACCCCTATAAG TTTTGCTAATAATAAAGATCTTTGTGGCCCGGGTACTACAAAACCCTGCCCEST: gi|66932184|gb|CX119032.1|CX119032
genomic: CA-GGAGAGGTTCCGTCTACTGGCTCCTTTTCACTCTTTACCCCTATAAGgtgctttttc ... attgtcgcagTTTTGCTAATAATAAAGATCTTTGTGGCCCGGGTACTACAAAACCCTGCCC
EST: TCAGGAGAGGTTCCGTCTACTGGCTCCTTTTCACTCTTTACCCCTATAAG TTTTGCTAATAATAAAGATCTTTGTGGCCCGGGTACTACAAAACCCTGCCCEST: gi|58665168|gb|CK053854.1|CK053854
genomic: TCAGGAGAGGTTCCGTCTACTGGCTCCTTTTCACTCTTTACCCCTATAAGgtgctttttc ... attgtcgcagTTTTGCTAATAATAAAGATCTTTGTGGCCCGGGTACTACAAAACCCTGCCC
EST: TCAGGAGAGGTTCCGTCTACTGGCTCCTTTTCACTCTTTACCCCTATAAG TTTTGCTAATAATAAAGATCTTTGTGGCCCGGGTACTACAAAACCCTGCCC
genomic: TCAGGAGAGGTTCCGTCTACTGGCTCCTTTTCACTCTTTACCCCTATAAGgtgctttttc ... attgtcgcagTTTTGCTAATAATAAAGATCTTTGTGGCCCGGGTACTACAAAACCCTGCCC
tcttagtgcttactacatcttgtgaggctgacaaatggttatttcattgtcgcagTTTTGCTAATAATAAAGATCTTTGTGGCCCGGGTACTACAAAACCCTGCCCTGGAGCTCCACCTTTTTCTCCACCACCTCCTTTCAATCCCCCAACACCT
tttcatt CT-rich tract
ttatttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgctttttctagatagaatttaggttcttagtgcttactacatcttgtgaggctgacaaatggttatttcattgtcgcagTTTTGCTAATAATAAAGATCTTTGTGGCCCGGGTACTACAAAACCCTGCCCTGGAGCTCCACCTTTTTCTCCACCACCTCCTTTCAATCCCCCAACACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT